Variant report

Variant	rs62274613
Chromosome Location	chr3:89157751-89157752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13316764	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13323078	0.88[AMR][1000 genomes]
rs62274614	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274619	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs62274634	0.80[AMR][1000 genomes]
rs62274635	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9839323	0.88[AMR][1000 genomes]
rs9864261	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89156000-89158200	Active TSS	Right Atrium	heart
2	chr3:89156000-89158800	Active TSS	Brain Germinal Matrix	brain
3	chr3:89156000-89159600	Active TSS	Fetal Brain Male	brain
4	chr3:89156000-89159800	Active TSS	Stomach Smooth Muscle	stomach
5	chr3:89156200-89158200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:89156200-89158600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:89156200-89159200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:89156400-89157800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr3:89156400-89157800	Active TSS	Brain Anterior Caudate	brain
10	chr3:89156400-89158000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:89156600-89157800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:89156600-89157800	Active TSS	Brain Substantia Nigra	brain
13	chr3:89156600-89158000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:89156600-89158000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
15	chr3:89157200-89157800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
16	chr3:89157200-89157800	Active TSS	Fetal Muscle Trunk	muscle
17	chr3:89157200-89157800	Active TSS	Placenta	Placenta
18	chr3:89157200-89157800	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr3:89157200-89158000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:89157200-89158000	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr3:89157200-89158000	Active TSS	Fetal Stomach	stomach
22	chr3:89157200-89158000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
23	chr3:89157200-89158000	Active TSS	Rectal Smooth Muscle	rectum
24	chr3:89157400-89157800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr3:89157400-89157800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:89157600-89157800	Active TSS	Brain Hippocampus Middle	brain
27	chr3:89157600-89157800	Bivalent/Poised TSS	Fetal Lung	lung
28	chr3:89157600-89157800	Bivalent/Poised TSS	Osteobl	bone
29	chr3:89157600-89158000	Active TSS	Brain Cingulate Gyrus	brain
30	chr3:89157600-89158000	Enhancers	Fetal Heart	heart
31	chr3:89157600-89158200	Active TSS	Adipose Nuclei	Adipose
32	chr3:89157600-89158200	Active TSS	Brain Angular Gyrus	brain
33	chr3:89157600-89159000	Active TSS	Fetal Muscle Leg	muscle
34	chr3:89157600-89159200	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr3:89157600-89163000	Active TSS	Fetal Brain Female	brain
36	chr3:89157600-89163200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:89157600-89163200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:89157600-89163200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr3:89157600-89163400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:89157600-89163600	Weak transcription	Spleen	Spleen

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