Variant report

Variant	rs62274635
Chromosome Location	chr3:89220658-89220659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs13316356	0.80[ASN][1000 genomes]
rs13323078	0.85[EUR][1000 genomes]
rs1398531	0.87[ASN][1000 genomes]
rs1567731	0.82[ASN][1000 genomes]
rs17026816	0.81[ASN][1000 genomes]
rs17738248	0.82[ASN][1000 genomes]
rs17800551	0.82[ASN][1000 genomes]
rs2063590	0.82[ASN][1000 genomes]
rs2137487	0.82[ASN][1000 genomes]
rs2137488	0.82[ASN][1000 genomes]
rs28834186	0.82[ASN][1000 genomes]
rs4857497	0.82[ASN][1000 genomes]
rs4857502	0.82[ASN][1000 genomes]
rs57468276	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62274613	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs62274619	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62274634	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274654	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62274656	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62274657	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62274981	0.80[ASN][1000 genomes]
rs62274982	0.80[ASN][1000 genomes]
rs62274984	0.80[ASN][1000 genomes]
rs62274986	0.82[ASN][1000 genomes]
rs62278161	0.87[ASN][1000 genomes]
rs62278163	0.87[ASN][1000 genomes]
rs62278164	0.83[ASN][1000 genomes]
rs62278166	0.82[ASN][1000 genomes]
rs62278168	0.82[ASN][1000 genomes]
rs62278170	0.82[ASN][1000 genomes]
rs62278171	0.82[ASN][1000 genomes]
rs62278172	0.82[ASN][1000 genomes]
rs6773815	0.82[ASN][1000 genomes]
rs6776281	0.87[ASN][1000 genomes]
rs6786204	0.82[ASN][1000 genomes]
rs6786328	0.82[ASN][1000 genomes]
rs6794975	0.87[ASN][1000 genomes]
rs6796339	0.87[ASN][1000 genomes]
rs73146387	0.87[ASN][1000 genomes]
rs7373232	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7374904	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9310110	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9310112	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9809894	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9829401	0.82[ASN][1000 genomes]
rs9839323	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9847087	0.82[ASN][1000 genomes]
rs9848971	0.87[ASN][1000 genomes]
rs9851954	0.82[ASN][1000 genomes]
rs9852594	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9852981	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9862195	0.82[ASN][1000 genomes]
rs9863058	0.82[ASN][1000 genomes]
rs9863971	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9864261	0.82[EUR][1000 genomes]
rs9883541	0.82[ASN][1000 genomes]
rs993186	0.82[ASN][1000 genomes]
rs993187	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005603	chr3:89174152-89223459	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1008916	chr3:89206065-89241915	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89215200-89221000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:89215200-89221000	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:89215200-89221400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:89215600-89221200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:89216200-89220800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:89216200-89221000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:89216200-89221000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:89216800-89220800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:89217000-89223400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:89217400-89220800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:89217400-89221400	Weak transcription	Brain Angular Gyrus	brain
12	chr3:89217400-89222400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:89217600-89220800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:89217600-89220800	Weak transcription	Brain Germinal Matrix	brain
15	chr3:89218200-89220800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:89218200-89220800	Weak transcription	Brain Anterior Caudate	brain
17	chr3:89219600-89220800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:89219800-89220800	Weak transcription	Fetal Brain Male	brain
19	chr3:89220400-89221000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:89220400-89221800	Enhancers	Fetal Brain Female	brain
21	chr3:89220400-89222200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr3:89220400-89222800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr3:89220400-89223600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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