Variant report

Variant	rs62274634
Chromosome Location	chr3:89213312-89213313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs13316356	0.82[ASN][1000 genomes]
rs13323078	0.89[EUR][1000 genomes]
rs1398531	0.89[ASN][1000 genomes]
rs1567731	0.84[ASN][1000 genomes]
rs17026816	0.83[ASN][1000 genomes]
rs17738248	0.85[ASN][1000 genomes]
rs17800551	0.84[ASN][1000 genomes]
rs2063590	0.84[ASN][1000 genomes]
rs2137487	0.84[ASN][1000 genomes]
rs2137488	0.84[ASN][1000 genomes]
rs28620812	0.81[ASN][1000 genomes]
rs28834186	0.85[ASN][1000 genomes]
rs4857497	0.85[ASN][1000 genomes]
rs4857502	0.84[ASN][1000 genomes]
rs57468276	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62274613	0.80[AMR][1000 genomes]
rs62274619	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62274635	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274654	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62274656	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62274657	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62274981	0.82[ASN][1000 genomes]
rs62274982	0.82[ASN][1000 genomes]
rs62274984	0.82[ASN][1000 genomes]
rs62274986	0.84[ASN][1000 genomes]
rs62278161	0.89[ASN][1000 genomes]
rs62278163	0.89[ASN][1000 genomes]
rs62278164	0.85[ASN][1000 genomes]
rs62278166	0.85[ASN][1000 genomes]
rs62278168	0.85[ASN][1000 genomes]
rs62278170	0.85[ASN][1000 genomes]
rs62278171	0.85[ASN][1000 genomes]
rs62278172	0.85[ASN][1000 genomes]
rs6773815	0.85[ASN][1000 genomes]
rs6776281	0.89[ASN][1000 genomes]
rs6786204	0.85[ASN][1000 genomes]
rs6786328	0.85[ASN][1000 genomes]
rs6794975	0.89[ASN][1000 genomes]
rs6796339	0.89[ASN][1000 genomes]
rs73146387	0.89[ASN][1000 genomes]
rs7373232	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7374904	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9310110	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310112	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9809894	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9829401	0.85[ASN][1000 genomes]
rs9839323	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9847087	0.85[ASN][1000 genomes]
rs9848971	0.89[ASN][1000 genomes]
rs9851954	0.85[ASN][1000 genomes]
rs9852594	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9852981	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9862195	0.85[ASN][1000 genomes]
rs9863058	0.84[ASN][1000 genomes]
rs9863971	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9864261	0.86[EUR][1000 genomes]
rs9866618	0.81[ASN][1000 genomes]
rs9883541	0.85[ASN][1000 genomes]
rs993186	0.84[ASN][1000 genomes]
rs993187	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005603	chr3:89174152-89223459	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1008916	chr3:89206065-89241915	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89211600-89217400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:89211800-89213400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:89211800-89213600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:89212000-89213600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:89212200-89213600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:89212200-89213800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:89212200-89214000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:89212200-89215000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:89213200-89215000	Enhancers	HUES64 Cell Line	embryonic stem cell

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