Variant report

Variant	rs9852981
Chromosome Location	chr3:89253461-89253462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs13316356	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs13323078	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs1398531	0.93[ASN][1000 genomes]
rs1567731	0.84[ASN][1000 genomes]
rs17026816	0.87[ASN][1000 genomes]
rs17738248	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17800551	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs2063590	0.84[ASN][1000 genomes]
rs2137487	0.84[ASN][1000 genomes]
rs2137488	0.84[ASN][1000 genomes]
rs2175670	0.90[YRI][hapmap]
rs28620812	0.85[ASN][1000 genomes]
rs28834186	0.89[ASN][1000 genomes]
rs4857497	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4857502	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs57468276	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274619	0.92[EUR][1000 genomes]
rs62274634	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62274635	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62274654	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274656	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274657	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274981	0.87[ASN][1000 genomes]
rs62274982	0.87[ASN][1000 genomes]
rs62274984	0.82[ASN][1000 genomes]
rs62274986	0.84[ASN][1000 genomes]
rs62278161	0.93[ASN][1000 genomes]
rs62278163	0.93[ASN][1000 genomes]
rs62278164	0.89[ASN][1000 genomes]
rs62278166	0.89[ASN][1000 genomes]
rs62278168	0.89[ASN][1000 genomes]
rs62278170	0.89[ASN][1000 genomes]
rs62278171	0.89[ASN][1000 genomes]
rs62278172	0.89[ASN][1000 genomes]
rs6773815	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs6776281	0.93[ASN][1000 genomes]
rs6786204	0.89[ASN][1000 genomes]
rs6786328	0.89[ASN][1000 genomes]
rs6794975	0.93[ASN][1000 genomes]
rs6796339	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs73146387	0.93[ASN][1000 genomes]
rs7373232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7374904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7428598	0.95[YRI][hapmap]
rs7429534	0.82[YRI][hapmap]
rs7609645	0.94[YRI][hapmap]
rs9310110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9310112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9809894	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9821666	0.86[CHB][hapmap]
rs9829401	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs9839323	0.90[EUR][1000 genomes]
rs9847087	0.89[ASN][1000 genomes]
rs9848971	0.93[ASN][1000 genomes]
rs9851954	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs9852380	0.86[CHB][hapmap]
rs9852594	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9852722	0.86[CHB][hapmap]
rs9862195	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs9863058	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs9863107	0.86[CHB][hapmap];0.90[YRI][hapmap]
rs9863971	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9864261	0.81[EUR][1000 genomes]
rs9866618	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9875278	0.84[CHB][hapmap]
rs9883541	0.89[ASN][1000 genomes]
rs993186	0.84[ASN][1000 genomes]
rs993187	0.86[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89250200-89263200	Weak transcription	Fetal Brain Female	brain
2	chr3:89250400-89261800	Weak transcription	Fetal Brain Male	brain
3	chr3:89251200-89259200	Weak transcription	Fetal Muscle Leg	muscle

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