Variant report

Variant	rs62275840
Chromosome Location	chr3:156698994-156698995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17442011	0.82[EUR][1000 genomes]
rs17442045	0.82[EUR][1000 genomes]
rs62275253	0.82[EUR][1000 genomes]
rs62275255	0.82[EUR][1000 genomes]
rs62275256	0.82[EUR][1000 genomes]
rs62275257	0.82[EUR][1000 genomes]
rs62275258	0.82[EUR][1000 genomes]
rs62275259	0.82[EUR][1000 genomes]
rs62275760	0.82[EUR][1000 genomes]
rs62275761	0.82[EUR][1000 genomes]
rs62275762	0.82[EUR][1000 genomes]
rs62275764	0.82[EUR][1000 genomes]
rs62275766	0.82[EUR][1000 genomes]
rs62275767	0.82[EUR][1000 genomes]
rs62275795	0.82[EUR][1000 genomes]
rs62275796	0.82[EUR][1000 genomes]
rs62275798	0.82[EUR][1000 genomes]
rs62275799	0.82[EUR][1000 genomes]
rs62275800	0.82[EUR][1000 genomes]
rs62275801	0.82[EUR][1000 genomes]
rs62275804	0.82[EUR][1000 genomes]
rs62275805	0.82[EUR][1000 genomes]
rs62275806	0.82[EUR][1000 genomes]
rs62275808	0.82[EUR][1000 genomes]
rs62275809	0.82[EUR][1000 genomes]
rs62275810	0.82[EUR][1000 genomes]
rs62275811	0.82[EUR][1000 genomes]
rs62275812	0.82[EUR][1000 genomes]
rs62275813	0.82[EUR][1000 genomes]
rs62275829	0.87[EUR][1000 genomes]
rs62275830	0.87[EUR][1000 genomes]
rs62275837	0.97[EUR][1000 genomes]
rs62275839	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62275841	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62275842	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62275843	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62275844	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156698200-156702200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:156698400-156704200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:156698800-156701000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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