Variant report

Variant	rs62275843
Chromosome Location	chr3:156701598-156701599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs1482865	1.00[ASN][1000 genomes]
rs17380639	1.00[AFR][1000 genomes]
rs17381024	1.00[AFR][1000 genomes]
rs17381930	1.00[AFR][1000 genomes]
rs17382208	1.00[AFR][1000 genomes]
rs17440227	1.00[AFR][1000 genomes]
rs17440656	1.00[AFR][1000 genomes]
rs17440944	1.00[AFR][1000 genomes]
rs17442011	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17442045	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62273860	1.00[AFR][1000 genomes]
rs62273861	1.00[AFR][1000 genomes]
rs62273862	1.00[AFR][1000 genomes]
rs62273892	1.00[AFR][1000 genomes]
rs62273893	1.00[AFR][1000 genomes]
rs62273895	1.00[AFR][1000 genomes]
rs62273896	1.00[AFR][1000 genomes]
rs62273897	1.00[AFR][1000 genomes]
rs62273898	1.00[AFR][1000 genomes]
rs62273899	1.00[AFR][1000 genomes]
rs62273900	1.00[AFR][1000 genomes]
rs62273901	1.00[AFR][1000 genomes]
rs62273902	1.00[AFR][1000 genomes]
rs62273904	1.00[AFR][1000 genomes]
rs62273905	1.00[AFR][1000 genomes]
rs62273906	1.00[AFR][1000 genomes]
rs62273907	1.00[AFR][1000 genomes]
rs62273908	1.00[AFR][1000 genomes]
rs62273909	1.00[AFR][1000 genomes]
rs62273910	1.00[AFR][1000 genomes]
rs62273912	1.00[AFR][1000 genomes]
rs62273913	1.00[AFR][1000 genomes]
rs62273914	1.00[AFR][1000 genomes]
rs62273915	1.00[AFR][1000 genomes]
rs62273917	1.00[AFR][1000 genomes]
rs62273918	1.00[AFR][1000 genomes]
rs62273919	1.00[AFR][1000 genomes]
rs62273920	1.00[AFR][1000 genomes]
rs62273921	1.00[AFR][1000 genomes]
rs62273922	1.00[AFR][1000 genomes]
rs62273956	1.00[AFR][1000 genomes]
rs62273958	1.00[AFR][1000 genomes]
rs62273959	1.00[AFR][1000 genomes]
rs62275160	1.00[AFR][1000 genomes]
rs62275163	1.00[AFR][1000 genomes]
rs62275164	1.00[AFR][1000 genomes]
rs62275165	1.00[AFR][1000 genomes]
rs62275166	1.00[AFR][1000 genomes]
rs62275171	1.00[AFR][1000 genomes]
rs62275174	1.00[AFR][1000 genomes]
rs62275175	1.00[AFR][1000 genomes]
rs62275176	1.00[AFR][1000 genomes]
rs62275177	1.00[AFR][1000 genomes]
rs62275178	1.00[AFR][1000 genomes]
rs62275179	1.00[AFR][1000 genomes]
rs62275180	1.00[AFR][1000 genomes]
rs62275181	1.00[AFR][1000 genomes]
rs62275182	1.00[AFR][1000 genomes]
rs62275185	1.00[AFR][1000 genomes]
rs62275186	1.00[AFR][1000 genomes]
rs62275187	1.00[AFR][1000 genomes]
rs62275189	1.00[AFR][1000 genomes]
rs62275190	1.00[AFR][1000 genomes]
rs62275191	1.00[AFR][1000 genomes]
rs62275238	1.00[AFR][1000 genomes]
rs62275241	1.00[AFR][1000 genomes]
rs62275243	1.00[AFR][1000 genomes]
rs62275244	1.00[AFR][1000 genomes]
rs62275245	1.00[AFR][1000 genomes]
rs62275246	1.00[AFR][1000 genomes]
rs62275247	1.00[AFR][1000 genomes]
rs62275248	1.00[AFR][1000 genomes]
rs62275249	1.00[AFR][1000 genomes]
rs62275251	1.00[AFR][1000 genomes]
rs62275252	1.00[AFR][1000 genomes]
rs62275253	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275255	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275256	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275257	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275258	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275259	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275760	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275761	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275762	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275764	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275766	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275767	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275795	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275796	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275797	1.00[AFR][1000 genomes]
rs62275798	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275799	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275800	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275801	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275804	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275805	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275806	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275808	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275809	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275810	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275811	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275812	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275813	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275829	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62275830	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62275837	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275840	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62275841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277076	1.00[AFR][1000 genomes]
rs62277077	1.00[AFR][1000 genomes]
rs62277078	1.00[AFR][1000 genomes]
rs62277079	1.00[AFR][1000 genomes]
rs62277080	1.00[AFR][1000 genomes]
rs62277085	1.00[AFR][1000 genomes]
rs62277086	1.00[AFR][1000 genomes]
rs62277087	1.00[AFR][1000 genomes]
rs62277088	1.00[AFR][1000 genomes]
rs62277089	1.00[AFR][1000 genomes]
rs62277090	1.00[AFR][1000 genomes]
rs62277091	1.00[AFR][1000 genomes]
rs62277092	1.00[AFR][1000 genomes]
rs62277093	1.00[AFR][1000 genomes]
rs62277096	1.00[AFR][1000 genomes]
rs62277097	1.00[AFR][1000 genomes]
rs62277099	1.00[AFR][1000 genomes]
rs62277140	1.00[AFR][1000 genomes]
rs62277141	1.00[AFR][1000 genomes]
rs62277142	1.00[AFR][1000 genomes]
rs62277143	1.00[AFR][1000 genomes]
rs62277144	1.00[AFR][1000 genomes]
rs62277145	1.00[AFR][1000 genomes]
rs62277146	1.00[AFR][1000 genomes]
rs62277147	1.00[AFR][1000 genomes]
rs62277148	1.00[AFR][1000 genomes]
rs62277150	1.00[AFR][1000 genomes]
rs62277152	1.00[AFR][1000 genomes]
rs62277153	1.00[AFR][1000 genomes]
rs62277155	1.00[AFR][1000 genomes]
rs62277157	1.00[AFR][1000 genomes]
rs62277158	1.00[AFR][1000 genomes]
rs62278060	1.00[AFR][1000 genomes]
rs62278061	1.00[AFR][1000 genomes]
rs62278062	1.00[AFR][1000 genomes]
rs62278064	1.00[AFR][1000 genomes]
rs62278065	1.00[AFR][1000 genomes]
rs62278066	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156698200-156702200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:156698400-156704200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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