Variant report

Variant	rs62273862
Chromosome Location	chr3:156535405-156535406
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:156534410-156535526	U87	brain:	n/a	n/a
2	POLR2A	chr3:156533625-156536326	GM12891	blood:	n/a	n/a
3	WRNIP1	chr3:156534971-156535444	GM12878	blood:	n/a	n/a
4	EBF1	chr3:156534721-156535804	GM12878	blood:	n/a	n/a
5	FOS	chr3:156534862-156536412	MCF10A-Er-Src	breast:	n/a	chr3:156535425-156535435 chr3:156535483-156535492 chr3:156535426-156535434 chr3:156536139-156536150 chr3:156535425-156535435
6	ELF1	chr3:156534402-156535507	MCF-7	breast:	n/a	chr3:156535337-156535346
7	RELA	chr3:156534453-156535448	GM15510	blood:	n/a	n/a
8	STAT3	chr3:156534803-156535754	MCF10A-Er-Src	breast:	n/a	chr3:156535016-156535028
9	POLR2A	chr3:156533761-156536374	GM12891	blood:	n/a	n/a
10	RELA	chr3:156534288-156535419	GM18951	blood:	n/a	n/a
11	SIN3A	chr3:156534745-156535500	GM12878	blood:	n/a	chr3:156534943-156534952
12	MAZ	chr3:156533862-156535698	GM12878	blood:	n/a	n/a
13	RAD21	chr3:156534529-156535676	Hela-S3	cervix:	n/a	n/a
14	REST	chr3:156534530-156535434	HL-60	blood:	n/a	chr3:156535275-156535293 chr3:156535047-156535054
15	STAT5A	chr3:156534403-156535514	GM12878	blood:	n/a	chr3:156535016-156535028
16	MXI1	chr3:156533639-156535512	GM12878	blood:	n/a	n/a
17	SMC3	chr3:156534842-156535514	GM12878	blood:	n/a	chr3:156534852-156534862
18	TEAD4	chr3:156534691-156535410	A549	lung:	n/a	n/a
19	RCOR1	chr3:156533755-156535505	GM12878	blood:	n/a	n/a
20	NR3C1	chr3:156534168-156535407	A549	lung:	n/a	chr3:156535041-156535057 chr3:156535042-156535056 chr3:156535041-156535057 chr3:156535041-156535057 chr3:156535042-156535056 chr3:156535041-156535057 chr3:156535040-156535058
21	TCF7L2	chr3:156533776-156535485	HCT-116	colon:	n/a	n/a
22	POLR2A	chr3:156533232-156535613	PANC-1	pancreas:	n/a	n/a
23	POLR2A	chr3:156533871-156535616	HCT-116	colon:	n/a	n/a
24	NFIC	chr3:156533560-156536281	GM12878	blood:	n/a	n/a
25	MAX	chr3:156533934-156535568	MCF-7	breast:	n/a	n/a
26	POLR2A	chr3:156533377-156536265	GM18505	blood:	n/a	n/a
27	KAP1	chr3:156534586-156535822	U2OS	brain:	n/a	chr3:156535424-156535433
28	POLR2A	chr3:156534018-156535555	H1-hESC	embryonic stem cell:	n/a	n/a
29	RAD21	chr3:156533575-156536532	IMR90	lung:	n/a	chr3:156536331-156536343
30	MTA3	chr3:156534460-156536170	GM12878	blood:	n/a	n/a
31	RUNX3	chr3:156534455-156535608	GM12878	blood:	n/a	n/a
32	POLR2A	chr3:156533451-156536440	HUVEC	blood vessel:	n/a	n/a
33	POLR2A	chr3:156534093-156536501	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr3:156533950-156535733	Hela-S3	cervix:	n/a	n/a
35	RELA	chr3:156534527-156535760	GM19099	blood:	n/a	n/a
36	EP300	chr3:156534559-156535640	GM12878	blood:	n/a	chr3:156535019-156535032
37	FOXM1	chr3:156533533-156535692	GM12878	blood:	n/a	n/a
38	GATA3	chr3:156534580-156535728	T-47D	breast:	n/a	n/a
39	MAX	chr3:156533813-156535414	H1-hESC	embryonic stem cell:	n/a	n/a
40	ELF1	chr3:156533742-156535407	MCF-7	breast:	n/a	chr3:156535337-156535346
41	HA-E2F1	chr3:156534413-156535412	MCF-7	breast:	n/a	chr3:156534855-156534864 chr3:156534852-156534862 chr3:156534930-156534941
42	CEBPB	chr3:156534389-156535416	MCF-7	breast:	n/a	n/a
43	POLR2A	chr3:156534876-156536388	GM12891	blood:	n/a	n/a
44	RCOR1	chr3:156534696-156535476	K562	blood:	n/a	n/a
45	POLR2A	chr3:156533715-156535451	GM18526	blood:	n/a	n/a
46	POLR2A	chr3:156533515-156536380	GM12892	blood:	n/a	n/a
47	MAX	chr3:156533259-156535596	HCT-116	colon:	n/a	n/a
48	POLR2A	chr3:156533768-156535453	GM12878	blood:	n/a	n/a
49	SMC3	chr3:156534286-156535638	Hela-S3	cervix:	n/a	chr3:156534852-156534862
50	POLR2A	chr3:156533708-156535647	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:79824042..79825935-chr3:156533606..156535804,2	MCF-7	breast:
2	chr3:156533499..156536526-chr3:156891417..156894235,3	MCF-7	breast:
3	chr3:156388866..156397270-chr3:156524172..156537549,71	MCF-7	breast:
4	chr3:156398277..156399955-chr3:156533630..156535549,2	MCF-7	breast:
5	chr3:156397478..156399872-chr3:156533478..156536173,2	MCF-7	breast:
6	chr3:156393138..156393870-chr3:156535105..156535672,2	Hela-S3	cervix:
7	chr3:156534984..156535558-chr5:90609305..90610027,2	Hela-S3	cervix:
8	chr3:156535295..156535840-chr8:103818463..103819426,2	Hela-S3	cervix:
9	chr3:156534879..156535549-chr6:34855191..34855795,2	Hela-S3	cervix:
10	chr3:156533566..156537799-chr3:156875553..156879495,5	MCF-7	breast:
11	chr2:61107848..61108460-chr3:156534914..156535707,2	Hela-S3	cervix:
12	chr3:156533151..156536166-chr3:156876536..156878958,4	MCF-7	breast:
13	chr3:156389670..156395497-chr3:156530360..156537244,22	MCF-7	breast:
14	chr1:150551352..150551872-chr3:156535087..156535774,2	Hela-S3	cervix:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-3	chr3:156534676-156536308	NONHSAT092863

Variant related genes	Relation type
LINC00886	TF binding region
ENSG00000253669	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000243176	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000222675	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000228414	Chromatin interaction
ENSG00000262413	Chromatin interaction

Extended variants
information (count: 198 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs17380639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17381024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17381930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17382208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17440227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17440656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17440944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17442011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17442045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62273860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62273893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62273895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62273899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273901	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62273902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273955	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62274040	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62274041	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62274042	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62274046	1.00[AMR][1000 genomes]
rs62274047	0.89[AMR][1000 genomes]
rs62275160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275165	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62275166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275170	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62275171	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275173	1.00[AMR][1000 genomes]
rs62275174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62275189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275250	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275574	1.00[AMR][1000 genomes]
rs62275575	1.00[AMR][1000 genomes]
rs62275576	1.00[AMR][1000 genomes]
rs62275577	1.00[AMR][1000 genomes]
rs62275579	0.87[AMR][1000 genomes]
rs62275580	1.00[AMR][1000 genomes]
rs62275581	1.00[AMR][1000 genomes]
rs62275646	1.00[AMR][1000 genomes]
rs62275647	1.00[AMR][1000 genomes]
rs62275648	1.00[AMR][1000 genomes]
rs62275650	1.00[AMR][1000 genomes]
rs62275651	0.81[EUR][1000 genomes]
rs62275653	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62275760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62275798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275837	1.00[AFR][1000 genomes]
rs62275839	1.00[AFR][1000 genomes]
rs62275841	1.00[AFR][1000 genomes]
rs62275842	1.00[AFR][1000 genomes]
rs62275843	1.00[AFR][1000 genomes]
rs62275844	1.00[AFR][1000 genomes]
rs62276613	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62276615	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62276616	1.00[AMR][1000 genomes]
rs62276618	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276619	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276620	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276621	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276622	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276623	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276624	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276625	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277073	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277074	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277075	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277081	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277084	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62277096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277098	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62277099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277149	1.00[AMR][1000 genomes]
rs62277150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277152	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277159	0.86[EUR][1000 genomes]
rs62277391	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277392	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277396	1.00[AMR][1000 genomes]
rs62277398	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278060	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62278066	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7651446	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156533200-156536200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:156533400-156535600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
3	chr3:156533600-156535600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:156533600-156535600	Active TSS	Brain Anterior Caudate	brain
5	chr3:156533600-156535600	Active TSS	Brain Hippocampus Middle	brain
6	chr3:156533600-156535800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:156533600-156536000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:156533600-156536200	Active TSS	Rectal Smooth Muscle	rectum
9	chr3:156533800-156535600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:156533800-156535600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr3:156533800-156535600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr3:156533800-156535600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:156533800-156535600	Active TSS	Thymus	Thymus
14	chr3:156533800-156535600	Flanking Active TSS	HMEC	breast
15	chr3:156533800-156535800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:156533800-156536000	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr3:156534000-156535600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:156534000-156535600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:156534000-156535600	Active TSS	Brain Angular Gyrus	brain
20	chr3:156534000-156535800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr3:156534200-156535800	Active TSS	Liver	Liver
22	chr3:156534400-156535600	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr3:156534400-156535600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:156534400-156535600	Active TSS	Right Atrium	heart
25	chr3:156534400-156535600	Active TSS	Right Ventricle	heart
26	chr3:156534400-156536800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:156534600-156535600	Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr3:156534600-156535800	Active TSS	K562	blood
29	chr3:156534800-156535600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr3:156534800-156535800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:156535000-156535600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
32	chr3:156535000-156535600	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr3:156535000-156535600	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr3:156535000-156535600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr3:156535000-156535600	Flanking Active TSS	HSMMtube	muscle
36	chr3:156535000-156535600	Flanking Active TSS	HUVEC	blood vessel
37	chr3:156535000-156535600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr3:156535000-156535600	Flanking Active TSS	NH-A	brain
39	chr3:156535000-156535600	Flanking Active TSS	NHLF	lung
40	chr3:156535000-156535800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
41	chr3:156535000-156535800	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr3:156535000-156535800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:156535000-156536200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr3:156535000-156536400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:156535000-156536400	Flanking Active TSS	NHEK	skin
46	chr3:156535000-156537200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:156535200-156535600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr3:156535200-156535600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:156535200-156535600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr3:156535200-156535600	Flanking Active TSS	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

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