Variant report

Variant	rs62276615
Chromosome Location	chr3:156382287-156382288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156377079..156379353-chr3:156380561..156383322,2	K562	blood:
2	chr3:156271840..156274505-chr3:156381741..156384652,3	K562	blood:
3	chr3:156381978..156383711-chr3:156389333..156390937,2	MCF-7	breast:
4	chr3:156272045..156274505-chr3:156381741..156383798,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs17380639	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17381024	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17381930	1.00[AMR][1000 genomes]
rs17382208	1.00[AMR][1000 genomes]
rs17440227	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17440656	1.00[AMR][1000 genomes]
rs17440944	1.00[AMR][1000 genomes]
rs62273860	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273861	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273862	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273892	1.00[AMR][1000 genomes]
rs62273893	1.00[AMR][1000 genomes]
rs62273895	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273896	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273897	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273898	1.00[AMR][1000 genomes]
rs62273899	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273900	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273901	0.89[AMR][1000 genomes]
rs62273902	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273904	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273905	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273906	1.00[AMR][1000 genomes]
rs62273907	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273908	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273909	1.00[AMR][1000 genomes]
rs62273910	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273912	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273913	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273914	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273915	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273916	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273917	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273918	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273919	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273920	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62273921	1.00[AMR][1000 genomes]
rs62273922	1.00[AMR][1000 genomes]
rs62273955	1.00[AMR][1000 genomes]
rs62273956	1.00[AMR][1000 genomes]
rs62273958	1.00[AMR][1000 genomes]
rs62273959	1.00[AMR][1000 genomes]
rs62274040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274041	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274046	1.00[AMR][1000 genomes]
rs62274047	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275160	1.00[AMR][1000 genomes]
rs62275163	1.00[AMR][1000 genomes]
rs62275164	1.00[AMR][1000 genomes]
rs62275165	0.89[AMR][1000 genomes]
rs62275166	1.00[AMR][1000 genomes]
rs62275170	1.00[AMR][1000 genomes]
rs62275171	0.89[AMR][1000 genomes]
rs62275173	1.00[AMR][1000 genomes]
rs62275174	1.00[AMR][1000 genomes]
rs62275175	1.00[AMR][1000 genomes]
rs62275176	1.00[AMR][1000 genomes]
rs62275177	1.00[AMR][1000 genomes]
rs62275178	1.00[AMR][1000 genomes]
rs62275179	1.00[AMR][1000 genomes]
rs62275180	1.00[AMR][1000 genomes]
rs62275181	1.00[AMR][1000 genomes]
rs62275182	1.00[AMR][1000 genomes]
rs62275185	1.00[AMR][1000 genomes]
rs62275186	1.00[AMR][1000 genomes]
rs62275187	1.00[AMR][1000 genomes]
rs62275189	1.00[AMR][1000 genomes]
rs62275190	1.00[AMR][1000 genomes]
rs62275191	1.00[AMR][1000 genomes]
rs62275238	1.00[AMR][1000 genomes]
rs62275241	1.00[AMR][1000 genomes]
rs62275243	1.00[AMR][1000 genomes]
rs62275244	1.00[AMR][1000 genomes]
rs62275245	1.00[AMR][1000 genomes]
rs62275246	1.00[AMR][1000 genomes]
rs62275247	1.00[AMR][1000 genomes]
rs62275248	1.00[AMR][1000 genomes]
rs62275249	1.00[AMR][1000 genomes]
rs62275250	1.00[AMR][1000 genomes]
rs62275251	1.00[AMR][1000 genomes]
rs62275252	1.00[AMR][1000 genomes]
rs62275253	1.00[AMR][1000 genomes]
rs62275255	1.00[AMR][1000 genomes]
rs62275256	1.00[AMR][1000 genomes]
rs62275257	1.00[AMR][1000 genomes]
rs62275258	1.00[AMR][1000 genomes]
rs62275259	1.00[AMR][1000 genomes]
rs62275574	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62275575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275576	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275579	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62275580	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275646	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275651	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275760	1.00[AMR][1000 genomes]
rs62276613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276616	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62276618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277076	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277077	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277078	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277079	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277080	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277081	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277084	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277085	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277086	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277087	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277088	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277089	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277090	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277091	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277092	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277093	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62277096	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277097	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277098	1.00[AMR][1000 genomes]
rs62277099	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277140	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277141	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277142	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277143	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277144	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277145	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277146	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277147	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277148	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277149	1.00[AMR][1000 genomes]
rs62277150	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62277153	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62277155	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62277156	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62277157	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62277158	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62277391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277392	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277396	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62277398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278060	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62278061	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62278062	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62278064	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62278065	1.00[AMR][1000 genomes]
rs7651446	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156376600-156382400	Weak transcription	Fetal Kidney	kidney
2	chr3:156376600-156383800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:156376600-156385600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:156377400-156386000	Weak transcription	Psoas Muscle	Psoas
5	chr3:156377600-156383000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:156380600-156384200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:156381200-156382400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:156381200-156384000	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:156381400-156383400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:156381400-156383600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr3:156381400-156384200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:156381600-156382400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr3:156381600-156382400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:156381600-156382400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr3:156381600-156383600	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:156381600-156383800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:156381600-156384400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:156381800-156383200	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr3:156381800-156383600	Flanking Active TSS	GM12878-XiMat	blood
20	chr3:156381800-156383800	Enhancers	K562	blood
21	chr3:156382000-156382400	Enhancers	Primary B cells from cord blood	blood
22	chr3:156382000-156382600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr3:156382000-156383000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:156382000-156383400	Enhancers	NHLF	lung
25	chr3:156382000-156383600	Enhancers	HUVEC	blood vessel
26	chr3:156382200-156382400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:156382200-156382400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:156382200-156382600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:156382200-156382600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr3:156382200-156382600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:156382200-156382600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:156382200-156382600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr3:156382200-156383000	Enhancers	Primary T cells from cord blood	blood
34	chr3:156382200-156383000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr3:156382200-156383000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr3:156382200-156383000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:156382200-156383000	Enhancers	HSMMtube	muscle
38	chr3:156382200-156383200	Enhancers	Fetal Lung	lung
39	chr3:156382200-156383200	Enhancers	Stomach Mucosa	stomach
40	chr3:156382200-156383400	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr3:156382200-156383400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:156382200-156383400	Enhancers	Brain Germinal Matrix	brain
43	chr3:156382200-156383600	Enhancers	HSMM	muscle
44	chr3:156382200-156383600	Enhancers	Osteobl	bone
45	chr3:156382200-156383800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:156382200-156383800	Enhancers	Muscle Satellite Cultured Cells	--
47	chr3:156382200-156383800	Enhancers	NHDF-Ad	bronchial
48	chr3:156382200-156384000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:156382200-156384000	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr3:156382200-156384200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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