Variant report

Variant	rs62277392
Chromosome Location	chr3:156422144-156422145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156391290..156393892-chr3:156420316..156422645,2	MCF-7	breast:
2	chr3:156417836..156420595-chr3:156422104..156423993,2	MCF-7	breast:
3	chr3:156419995..156422332-chr3:156437118..156439741,2	K562	blood:
4	chr3:156413591..156415384-chr3:156421420..156423521,2	K562	blood:
5	chr3:156421711..156423925-chr3:156426591..156428378,2	MCF-7	breast:
6	chr3:156397309..156399430-chr3:156420727..156423184,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 186 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:185)

rs_ID	r²[population]
rs17380639	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17381024	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17381930	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17382208	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17440227	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17440656	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17440944	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17442011	1.00[AMR][1000 genomes]
rs17442045	1.00[AMR][1000 genomes]
rs62273860	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273861	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273862	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273892	1.00[AMR][1000 genomes]
rs62273893	1.00[AMR][1000 genomes]
rs62273895	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273896	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273897	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273898	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62273899	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273900	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273901	0.89[AMR][1000 genomes]
rs62273902	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273904	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273905	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273906	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273907	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273908	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273909	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273910	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273912	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273913	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273914	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273915	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273916	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273917	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273918	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273919	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273920	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273921	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273922	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273955	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273956	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273958	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273959	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62274040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274046	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274047	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62275160	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275163	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275164	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275165	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62275166	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275170	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62275171	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275173	1.00[AMR][1000 genomes]
rs62275174	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275175	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275176	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275177	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275178	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275179	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275180	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275181	1.00[AMR][1000 genomes]
rs62275182	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275185	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275186	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275187	1.00[AMR][1000 genomes]
rs62275189	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275190	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275191	1.00[AMR][1000 genomes]
rs62275238	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275241	1.00[AMR][1000 genomes]
rs62275243	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275244	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275245	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275246	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275247	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275248	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275249	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275250	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275251	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275252	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275253	1.00[AMR][1000 genomes]
rs62275255	1.00[AMR][1000 genomes]
rs62275256	1.00[AMR][1000 genomes]
rs62275257	1.00[AMR][1000 genomes]
rs62275258	1.00[AMR][1000 genomes]
rs62275259	1.00[AMR][1000 genomes]
rs62275574	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62275575	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275576	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275577	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275579	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62275580	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275581	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275646	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275647	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275648	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275650	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275651	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275653	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275760	1.00[AMR][1000 genomes]
rs62275761	1.00[AMR][1000 genomes]
rs62275762	1.00[AMR][1000 genomes]
rs62275764	1.00[AMR][1000 genomes]
rs62275766	1.00[AMR][1000 genomes]
rs62275767	1.00[AMR][1000 genomes]
rs62275795	1.00[AMR][1000 genomes]
rs62275796	1.00[AMR][1000 genomes]
rs62275797	1.00[AMR][1000 genomes]
rs62275798	1.00[AMR][1000 genomes]
rs62275799	1.00[AMR][1000 genomes]
rs62275800	1.00[AMR][1000 genomes]
rs62275801	1.00[AMR][1000 genomes]
rs62275804	1.00[AMR][1000 genomes]
rs62275805	1.00[AMR][1000 genomes]
rs62275806	1.00[AMR][1000 genomes]
rs62275808	1.00[AMR][1000 genomes]
rs62275809	1.00[AMR][1000 genomes]
rs62275810	1.00[AMR][1000 genomes]
rs62275811	1.00[AMR][1000 genomes]
rs62275812	1.00[AMR][1000 genomes]
rs62275813	1.00[AMR][1000 genomes]
rs62276613	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276615	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276616	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62276618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277084	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277085	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277086	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277087	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277088	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277089	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277090	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277091	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277092	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277093	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277096	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277097	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277098	1.00[AMR][1000 genomes]
rs62277099	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277140	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277141	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277142	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277143	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277144	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277145	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277146	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277147	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277148	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277149	1.00[AMR][1000 genomes]
rs62277150	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277153	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277155	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277156	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277157	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277158	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277396	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62277398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278060	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278061	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278062	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278064	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278065	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62278066	0.83[EUR][1000 genomes]
rs7651446	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156394000-156436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:156395600-156438600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:156396400-156424800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:156396600-156441000	Weak transcription	Lung	lung
5	chr3:156407800-156423800	Weak transcription	Spleen	Spleen
6	chr3:156407800-156424000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:156407800-156428200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:156409000-156429800	Weak transcription	Gastric	stomach
9	chr3:156409200-156425400	Weak transcription	Colonic Mucosa	Colon
10	chr3:156409400-156422200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:156409400-156425600	Weak transcription	Fetal Brain Male	brain
12	chr3:156409600-156422400	Weak transcription	Fetal Stomach	stomach
13	chr3:156410000-156427400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:156411000-156424200	Genic enhancers	Muscle Satellite Cultured Cells	--
15	chr3:156411400-156426000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:156411600-156422200	Weak transcription	Stomach Mucosa	stomach
17	chr3:156411600-156426000	Strong transcription	HSMMtube	muscle
18	chr3:156411600-156429000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:156411800-156425400	Strong transcription	Hela-S3	cervix
20	chr3:156412400-156429400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:156412600-156429200	Strong transcription	HSMM	muscle
22	chr3:156414400-156423800	Weak transcription	Fetal Lung	lung
23	chr3:156414800-156426600	Weak transcription	Brain Germinal Matrix	brain
24	chr3:156416000-156437000	Weak transcription	Pancreas	Pancrea
25	chr3:156416000-156443000	Weak transcription	Aorta	Aorta
26	chr3:156416200-156422200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr3:156417000-156430400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr3:156417400-156423600	Weak transcription	Left Ventricle	heart
29	chr3:156418000-156425600	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr3:156418200-156424400	Strong transcription	NHDF-Ad	bronchial
31	chr3:156418400-156428600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:156418800-156428600	Strong transcription	HUVEC	blood vessel
33	chr3:156419000-156426400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr3:156419400-156424400	Strong transcription	Dnd41	blood
35	chr3:156419800-156433800	Weak transcription	Esophagus	oesophagus
36	chr3:156420200-156423400	Genic enhancers	A549	lung
37	chr3:156420200-156424400	Strong transcription	K562	blood
38	chr3:156420400-156424200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:156420400-156424400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:156420400-156424400	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:156420400-156426000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr3:156420600-156422200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr3:156420600-156423800	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr3:156420600-156424200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
45	chr3:156420600-156424200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:156420600-156424800	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:156420600-156428600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:156420600-156429800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:156420800-156422800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:156420800-156423000	Strong transcription	Stomach Smooth Muscle	stomach

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