Variant report

Variant	rs62276621
Chromosome Location	chr3:156399934-156399935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156398277..156399955-chr3:156533630..156535549,2	MCF-7	breast:
2	chr3:156398881..156401137-chr3:156542792..156545641,2	MCF-7	breast:
3	chr3:156399372..156402148-chr3:156402188..156404792,4	MCF-7	breast:
4	chr3:156391507..156394071-chr3:156396999..156400389,4	MCF-7	breast:
5	chr3:156399612..156401929-chr3:156863576..156865457,2	K562	blood:
6	chr3:156398799..156400378-chr3:156543351..156545988,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197980	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000240875	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 179 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs17380639	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17381024	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17381930	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17382208	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17440227	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17440656	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17440944	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17442011	1.00[AMR][1000 genomes]
rs62273860	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273861	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273862	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273892	1.00[AMR][1000 genomes]
rs62273893	1.00[AMR][1000 genomes]
rs62273895	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273896	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273897	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273898	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62273899	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273900	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273901	0.89[AMR][1000 genomes]
rs62273902	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273904	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273905	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273906	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273907	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273908	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273909	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273910	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273912	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273913	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273914	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273915	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273916	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273917	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273918	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273919	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273920	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273921	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273922	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273955	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273956	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273958	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62273959	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62274040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274046	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274047	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62275160	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275163	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275164	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275165	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62275166	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275170	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62275171	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275173	1.00[AMR][1000 genomes]
rs62275174	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275175	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275176	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275177	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275178	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275179	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275180	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275181	1.00[AMR][1000 genomes]
rs62275182	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275185	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275186	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275187	1.00[AMR][1000 genomes]
rs62275189	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275190	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275191	1.00[AMR][1000 genomes]
rs62275238	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275241	1.00[AMR][1000 genomes]
rs62275243	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275244	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275245	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275246	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275247	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275248	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275249	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275250	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275251	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275252	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275253	1.00[AMR][1000 genomes]
rs62275255	1.00[AMR][1000 genomes]
rs62275256	1.00[AMR][1000 genomes]
rs62275257	1.00[AMR][1000 genomes]
rs62275258	1.00[AMR][1000 genomes]
rs62275259	1.00[AMR][1000 genomes]
rs62275574	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62275575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275576	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275579	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62275580	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275646	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275651	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275760	1.00[AMR][1000 genomes]
rs62275761	1.00[AMR][1000 genomes]
rs62275762	1.00[AMR][1000 genomes]
rs62275764	1.00[AMR][1000 genomes]
rs62275766	1.00[AMR][1000 genomes]
rs62275767	1.00[AMR][1000 genomes]
rs62275795	1.00[AMR][1000 genomes]
rs62275796	1.00[AMR][1000 genomes]
rs62275797	1.00[AMR][1000 genomes]
rs62275798	1.00[AMR][1000 genomes]
rs62275799	1.00[AMR][1000 genomes]
rs62275800	1.00[AMR][1000 genomes]
rs62275801	1.00[AMR][1000 genomes]
rs62275804	1.00[AMR][1000 genomes]
rs62275805	1.00[AMR][1000 genomes]
rs62275806	1.00[AMR][1000 genomes]
rs62276613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276616	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62276618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277084	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277085	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277086	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277087	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277088	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277089	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277090	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277091	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277092	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277093	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277096	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277097	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277098	1.00[AMR][1000 genomes]
rs62277099	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277140	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277141	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277142	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277143	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277144	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277145	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277146	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277147	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277148	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277149	1.00[AMR][1000 genomes]
rs62277150	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277153	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277155	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277156	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277157	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277158	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277396	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62277398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278060	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278061	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278062	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278064	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278065	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62278066	0.83[EUR][1000 genomes]
rs7651446	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156393600-156401800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
2	chr3:156394000-156436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:156394200-156412600	Weak transcription	Placenta	Placenta
4	chr3:156394400-156404800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:156394400-156411800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:156394600-156402200	Enhancers	Fetal Heart	heart
7	chr3:156394600-156402800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:156394800-156400600	Genic enhancers	K562	blood
9	chr3:156394800-156403000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:156395000-156400800	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:156395400-156400000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:156395400-156400000	Genic enhancers	Liver	Liver
13	chr3:156395400-156401400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:156395400-156402800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
15	chr3:156395600-156400000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:156395600-156401800	Genic enhancers	HUVEC	blood vessel
17	chr3:156395600-156438600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:156395800-156400200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:156395800-156400800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:156395800-156408600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:156396200-156403600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:156396200-156407400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:156396400-156407400	Weak transcription	Esophagus	oesophagus
24	chr3:156396400-156407400	Weak transcription	Spleen	Spleen
25	chr3:156396400-156408800	Weak transcription	Colonic Mucosa	Colon
26	chr3:156396400-156413000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:156396400-156414400	Weak transcription	Thymus	Thymus
28	chr3:156396400-156424800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:156396600-156400600	Enhancers	Brain Angular Gyrus	brain
30	chr3:156396600-156441000	Weak transcription	Lung	lung
31	chr3:156397200-156400000	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
32	chr3:156397200-156400200	Genic enhancers	Primary T cells from cord blood	blood
33	chr3:156397200-156400600	Enhancers	Fetal Intestine Small	intestine
34	chr3:156397200-156400600	Enhancers	Stomach Mucosa	stomach
35	chr3:156397600-156400000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr3:156397600-156403400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:156397600-156404000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:156397800-156400000	Genic enhancers	HSMMtube	muscle
39	chr3:156397800-156413000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr3:156398000-156400200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:156398000-156400600	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr3:156398000-156400600	Enhancers	Small Intestine	intestine
43	chr3:156398200-156400000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr3:156398200-156400200	Genic enhancers	Primary hematopoietic stem cells	blood
45	chr3:156398200-156400400	Enhancers	Adipose Nuclei	Adipose
46	chr3:156398200-156400800	Enhancers	Brain Germinal Matrix	brain
47	chr3:156398200-156400800	Enhancers	Fetal Kidney	kidney
48	chr3:156398200-156403000	Enhancers	Rectal Smooth Muscle	rectum
49	chr3:156398400-156400000	Enhancers	Fetal Brain Male	brain
50	chr3:156398400-156400200	Enhancers	Primary monocytes fromperipheralblood	blood

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