Variant report

Variant	rs62275651
Chromosome Location	chr3:156369615-156369616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156270399..156272438-chr3:156367431..156369992,2	K562	blood:
2	chr3:156350925..156353491-chr3:156369407..156372280,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs17380639	0.85[EUR][1000 genomes]
rs17381024	0.85[EUR][1000 genomes]
rs17440227	0.85[EUR][1000 genomes]
rs62273860	0.81[EUR][1000 genomes]
rs62273861	0.81[EUR][1000 genomes]
rs62273862	0.81[EUR][1000 genomes]
rs62273895	0.81[EUR][1000 genomes]
rs62273896	0.81[EUR][1000 genomes]
rs62273897	0.81[EUR][1000 genomes]
rs62273899	0.81[EUR][1000 genomes]
rs62273900	0.81[EUR][1000 genomes]
rs62273902	0.81[EUR][1000 genomes]
rs62273904	0.81[EUR][1000 genomes]
rs62273905	0.81[EUR][1000 genomes]
rs62273907	0.81[EUR][1000 genomes]
rs62273908	0.81[EUR][1000 genomes]
rs62273910	0.81[EUR][1000 genomes]
rs62273912	0.81[EUR][1000 genomes]
rs62273913	0.81[EUR][1000 genomes]
rs62273914	0.81[EUR][1000 genomes]
rs62273915	0.81[EUR][1000 genomes]
rs62273916	0.81[EUR][1000 genomes]
rs62273917	0.81[EUR][1000 genomes]
rs62273918	0.81[EUR][1000 genomes]
rs62273919	0.81[EUR][1000 genomes]
rs62273920	0.81[EUR][1000 genomes]
rs62274040	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274041	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274042	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274047	0.83[EUR][1000 genomes]
rs62275574	1.00[ASN][1000 genomes]
rs62275575	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275576	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275577	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275579	1.00[ASN][1000 genomes]
rs62275580	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275581	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275646	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275647	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275648	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275650	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275653	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276613	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276615	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276616	1.00[ASN][1000 genomes]
rs62276618	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276619	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276620	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276621	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276622	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276623	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276624	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276625	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277073	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62277074	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62277075	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62277076	0.95[EUR][1000 genomes]
rs62277077	0.95[EUR][1000 genomes]
rs62277078	0.95[EUR][1000 genomes]
rs62277079	0.95[EUR][1000 genomes]
rs62277080	0.95[EUR][1000 genomes]
rs62277081	0.95[EUR][1000 genomes]
rs62277084	0.90[EUR][1000 genomes]
rs62277085	0.85[EUR][1000 genomes]
rs62277086	0.85[EUR][1000 genomes]
rs62277087	0.85[EUR][1000 genomes]
rs62277088	0.85[EUR][1000 genomes]
rs62277089	0.85[EUR][1000 genomes]
rs62277090	0.85[EUR][1000 genomes]
rs62277091	0.85[EUR][1000 genomes]
rs62277092	0.85[EUR][1000 genomes]
rs62277093	0.81[EUR][1000 genomes]
rs62277096	0.85[EUR][1000 genomes]
rs62277097	0.85[EUR][1000 genomes]
rs62277099	0.85[EUR][1000 genomes]
rs62277140	0.85[EUR][1000 genomes]
rs62277141	0.85[EUR][1000 genomes]
rs62277142	0.85[EUR][1000 genomes]
rs62277143	0.85[EUR][1000 genomes]
rs62277144	0.85[EUR][1000 genomes]
rs62277145	0.85[EUR][1000 genomes]
rs62277146	0.85[EUR][1000 genomes]
rs62277147	0.85[EUR][1000 genomes]
rs62277148	0.85[EUR][1000 genomes]
rs62277150	0.81[EUR][1000 genomes]
rs62277153	0.81[EUR][1000 genomes]
rs62277155	0.81[EUR][1000 genomes]
rs62277156	0.81[EUR][1000 genomes]
rs62277157	0.81[EUR][1000 genomes]
rs62277158	0.81[EUR][1000 genomes]
rs62277391	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277392	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277396	1.00[ASN][1000 genomes]
rs62277398	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278060	0.81[EUR][1000 genomes]
rs62278061	0.81[EUR][1000 genomes]
rs62278062	0.81[EUR][1000 genomes]
rs62278064	0.81[EUR][1000 genomes]
rs7651446	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156360000-156376600	Weak transcription	Psoas Muscle	Psoas
2	chr3:156368400-156370600	Weak transcription	GM12878-XiMat	blood
3	chr3:156369400-156371000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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