Variant report

Variant	rs62274047
Chromosome Location	chr3:156458799-156458800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156455142..156458106-chr3:156458193..156461275,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TIPARP-2	chr3:156458741-156459241	l_2510_chr3:156455819-156459241_testes

Extended variants
information (count: 183 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:181)

rs_ID	r²[population]
rs17380639	0.89[AMR][1000 genomes]
rs17381024	0.89[AMR][1000 genomes]
rs17381930	0.89[AMR][1000 genomes]
rs17382208	0.89[AMR][1000 genomes]
rs17440227	0.89[AMR][1000 genomes]
rs17440656	0.89[AMR][1000 genomes]
rs17440944	0.89[AMR][1000 genomes]
rs17442011	0.89[AMR][1000 genomes]
rs17442045	0.89[AMR][1000 genomes]
rs62273860	0.89[AMR][1000 genomes]
rs62273861	0.89[AMR][1000 genomes]
rs62273862	0.89[AMR][1000 genomes]
rs62273892	0.89[AMR][1000 genomes]
rs62273893	0.89[AMR][1000 genomes]
rs62273895	0.89[AMR][1000 genomes]
rs62273896	0.89[AMR][1000 genomes]
rs62273897	0.89[AMR][1000 genomes]
rs62273898	0.89[AMR][1000 genomes]
rs62273899	0.89[AMR][1000 genomes]
rs62273900	0.89[AMR][1000 genomes]
rs62273902	0.89[AMR][1000 genomes]
rs62273904	0.89[AMR][1000 genomes]
rs62273905	0.89[AMR][1000 genomes]
rs62273906	0.89[AMR][1000 genomes]
rs62273907	0.89[AMR][1000 genomes]
rs62273908	0.89[AMR][1000 genomes]
rs62273909	0.89[AMR][1000 genomes]
rs62273910	0.89[AMR][1000 genomes]
rs62273912	0.89[AMR][1000 genomes]
rs62273913	0.89[AMR][1000 genomes]
rs62273914	0.89[AMR][1000 genomes]
rs62273915	0.89[AMR][1000 genomes]
rs62273916	0.89[AMR][1000 genomes]
rs62273917	0.89[AMR][1000 genomes]
rs62273918	0.89[AMR][1000 genomes]
rs62273919	0.89[AMR][1000 genomes]
rs62273920	0.89[AMR][1000 genomes]
rs62273921	0.89[AMR][1000 genomes]
rs62273922	0.89[AMR][1000 genomes]
rs62273955	0.89[AMR][1000 genomes]
rs62273956	0.89[AMR][1000 genomes]
rs62273958	0.89[AMR][1000 genomes]
rs62273959	0.89[AMR][1000 genomes]
rs62274040	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62274041	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62274042	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62274046	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62275160	0.89[AMR][1000 genomes]
rs62275163	0.89[AMR][1000 genomes]
rs62275164	0.89[AMR][1000 genomes]
rs62275166	0.89[AMR][1000 genomes]
rs62275170	0.89[AMR][1000 genomes]
rs62275173	0.89[AMR][1000 genomes]
rs62275174	0.89[AMR][1000 genomes]
rs62275175	0.89[AMR][1000 genomes]
rs62275176	0.89[AMR][1000 genomes]
rs62275177	0.89[AMR][1000 genomes]
rs62275178	0.89[AMR][1000 genomes]
rs62275179	0.89[AMR][1000 genomes]
rs62275180	0.89[AMR][1000 genomes]
rs62275181	0.89[AMR][1000 genomes]
rs62275182	0.89[AMR][1000 genomes]
rs62275185	0.89[AMR][1000 genomes]
rs62275186	0.89[AMR][1000 genomes]
rs62275187	0.89[AMR][1000 genomes]
rs62275189	0.89[AMR][1000 genomes]
rs62275190	0.89[AMR][1000 genomes]
rs62275191	0.89[AMR][1000 genomes]
rs62275238	0.89[AMR][1000 genomes]
rs62275241	0.89[AMR][1000 genomes]
rs62275243	0.89[AMR][1000 genomes]
rs62275244	0.89[AMR][1000 genomes]
rs62275245	0.89[AMR][1000 genomes]
rs62275246	0.89[AMR][1000 genomes]
rs62275247	0.89[AMR][1000 genomes]
rs62275248	0.89[AMR][1000 genomes]
rs62275249	0.89[AMR][1000 genomes]
rs62275250	0.89[AMR][1000 genomes]
rs62275251	0.89[AMR][1000 genomes]
rs62275252	0.89[AMR][1000 genomes]
rs62275253	0.89[AMR][1000 genomes]
rs62275255	0.89[AMR][1000 genomes]
rs62275256	0.89[AMR][1000 genomes]
rs62275257	0.89[AMR][1000 genomes]
rs62275258	0.89[AMR][1000 genomes]
rs62275259	0.89[AMR][1000 genomes]
rs62275574	0.89[AMR][1000 genomes]
rs62275575	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275576	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275577	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275580	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62275581	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62275646	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62275647	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62275648	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62275650	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62275651	0.83[EUR][1000 genomes]
rs62275653	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275760	0.89[AMR][1000 genomes]
rs62275761	0.89[AMR][1000 genomes]
rs62275762	0.89[AMR][1000 genomes]
rs62275764	0.89[AMR][1000 genomes]
rs62275766	0.89[AMR][1000 genomes]
rs62275767	0.89[AMR][1000 genomes]
rs62275795	0.89[AMR][1000 genomes]
rs62275796	0.89[AMR][1000 genomes]
rs62275797	0.89[AMR][1000 genomes]
rs62275798	0.89[AMR][1000 genomes]
rs62275799	0.89[AMR][1000 genomes]
rs62275800	0.89[AMR][1000 genomes]
rs62275801	0.89[AMR][1000 genomes]
rs62275804	0.89[AMR][1000 genomes]
rs62275805	0.89[AMR][1000 genomes]
rs62275806	0.89[AMR][1000 genomes]
rs62275808	0.89[AMR][1000 genomes]
rs62275809	0.89[AMR][1000 genomes]
rs62275810	0.89[AMR][1000 genomes]
rs62275811	0.89[AMR][1000 genomes]
rs62275812	0.89[AMR][1000 genomes]
rs62275813	0.89[AMR][1000 genomes]
rs62275829	0.89[AMR][1000 genomes]
rs62275830	0.89[AMR][1000 genomes]
rs62276613	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62276615	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62276616	0.89[AMR][1000 genomes]
rs62276618	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62276619	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62276620	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62276621	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62276622	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62276623	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62276624	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62276625	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277073	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277074	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277075	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277076	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277077	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277078	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277079	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277080	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277081	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277084	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62277085	0.89[AMR][1000 genomes]
rs62277086	0.89[AMR][1000 genomes]
rs62277087	0.89[AMR][1000 genomes]
rs62277088	0.89[AMR][1000 genomes]
rs62277089	0.89[AMR][1000 genomes]
rs62277090	0.89[AMR][1000 genomes]
rs62277091	0.89[AMR][1000 genomes]
rs62277092	0.89[AMR][1000 genomes]
rs62277093	0.89[AMR][1000 genomes]
rs62277096	0.89[AMR][1000 genomes]
rs62277097	0.89[AMR][1000 genomes]
rs62277098	0.89[AMR][1000 genomes]
rs62277099	0.89[AMR][1000 genomes]
rs62277140	0.89[AMR][1000 genomes]
rs62277141	0.89[AMR][1000 genomes]
rs62277142	0.89[AMR][1000 genomes]
rs62277143	0.89[AMR][1000 genomes]
rs62277144	0.89[AMR][1000 genomes]
rs62277145	0.89[AMR][1000 genomes]
rs62277146	0.89[AMR][1000 genomes]
rs62277147	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62277148	0.89[AMR][1000 genomes]
rs62277149	0.89[AMR][1000 genomes]
rs62277150	0.89[AMR][1000 genomes]
rs62277153	0.89[AMR][1000 genomes]
rs62277155	0.89[AMR][1000 genomes]
rs62277156	0.89[AMR][1000 genomes]
rs62277157	0.89[AMR][1000 genomes]
rs62277158	0.89[AMR][1000 genomes]
rs62277391	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277392	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277396	0.89[AMR][1000 genomes]
rs62277398	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62278061	0.89[AMR][1000 genomes]
rs62278062	0.89[AMR][1000 genomes]
rs62278064	0.89[AMR][1000 genomes]
rs62278065	0.89[AMR][1000 genomes]
rs7651446	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156445600-156459600	Weak transcription	Brain Substantia Nigra	brain
2	chr3:156446400-156464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:156446400-156467000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:156447800-156464200	Weak transcription	HSMM	muscle
5	chr3:156447800-156464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:156447800-156465000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:156447800-156467000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:156448200-156462800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:156448200-156464200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:156448400-156464600	Weak transcription	NHEK	skin
11	chr3:156450400-156459200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:156450800-156461600	Weak transcription	HepG2	liver
13	chr3:156456000-156461800	Weak transcription	Fetal Intestine Small	intestine
14	chr3:156457000-156459400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:156457600-156460000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:156457800-156459000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:156458600-156459800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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