Variant report

Variant	rs62273861
Chromosome Location	chr3:156535267-156535268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr3:156534524-156535371	A549	lung:	n/a	chr3:156535041-156535057 chr3:156535042-156535056 chr3:156535041-156535057 chr3:156535041-156535057 chr3:156535042-156535056 chr3:156535041-156535057 chr3:156535040-156535058
2	ZNF143	chr3:156533923-156535325	H1-hESC	embryonic stem cell:	n/a	chr3:156534957-156534967 chr3:156534929-156534947 chr3:156534359-156534377
3	POLR2A	chr3:156534410-156535526	U87	brain:	n/a	n/a
4	POLR2A	chr3:156533625-156536326	GM12891	blood:	n/a	n/a
5	SIN3A	chr3:156534514-156535301	H1-hESC	embryonic stem cell:	n/a	chr3:156534943-156534952
6	TCF12	chr3:156534524-156535278	A549	lung:	n/a	n/a
7	TAF1	chr3:156534632-156535352	GM12891	blood:	n/a	n/a
8	POLR2A	chr3:156534370-156535361	HUVEC	blood vessel:	n/a	n/a
9	WRNIP1	chr3:156534971-156535444	GM12878	blood:	n/a	n/a
10	EBF1	chr3:156534721-156535804	GM12878	blood:	n/a	n/a
11	FOS	chr3:156534862-156536412	MCF10A-Er-Src	breast:	n/a	chr3:156535425-156535435 chr3:156535483-156535492 chr3:156535426-156535434 chr3:156536139-156536150 chr3:156535425-156535435
12	ELF1	chr3:156534402-156535507	MCF-7	breast:	n/a	chr3:156535337-156535346
13	CTCF	chr3:156535140-156535290	HUVEC	blood vessel:	n/a	n/a
14	RELA	chr3:156534453-156535448	GM15510	blood:	n/a	n/a
15	STAT3	chr3:156534803-156535754	MCF10A-Er-Src	breast:	n/a	chr3:156535016-156535028
16	POLR2A	chr3:156533761-156536374	GM12891	blood:	n/a	n/a
17	RELA	chr3:156534288-156535419	GM18951	blood:	n/a	n/a
18	SIN3A	chr3:156534745-156535500	GM12878	blood:	n/a	chr3:156534943-156534952
19	MAZ	chr3:156533862-156535698	GM12878	blood:	n/a	n/a
20	RAD21	chr3:156534529-156535676	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr3:156533825-156535271	MCF-7	breast:	n/a	n/a
22	REST	chr3:156534530-156535434	HL-60	blood:	n/a	chr3:156535275-156535293 chr3:156535047-156535054
23	MAZ	chr3:156534303-156535404	Hela-S3	cervix:	n/a	n/a
24	STAT5A	chr3:156534403-156535514	GM12878	blood:	n/a	chr3:156535016-156535028
25	MXI1	chr3:156533639-156535512	GM12878	blood:	n/a	n/a
26	SMC3	chr3:156534842-156535514	GM12878	blood:	n/a	chr3:156534852-156534862
27	POLR2A	chr3:156533759-156535294	MCF-7	breast:	n/a	n/a
28	TEAD4	chr3:156534691-156535410	A549	lung:	n/a	n/a
29	RCOR1	chr3:156533755-156535505	GM12878	blood:	n/a	n/a
30	NR3C1	chr3:156534168-156535407	A549	lung:	n/a	chr3:156535041-156535057 chr3:156535042-156535056 chr3:156535041-156535057 chr3:156535041-156535057 chr3:156535042-156535056 chr3:156535041-156535057 chr3:156535040-156535058
31	TCF7L2	chr3:156533776-156535485	HCT-116	colon:	n/a	n/a
32	ZNF143	chr3:156534681-156535320	Hela-S3	cervix:	n/a	chr3:156534957-156534967 chr3:156534929-156534947
33	POLR2A	chr3:156533232-156535613	PANC-1	pancreas:	n/a	n/a
34	POLR2A	chr3:156533871-156535616	HCT-116	colon:	n/a	n/a
35	MYC	chr3:156534618-156535398	K562	blood:	n/a	n/a
36	BHLHE40	chr3:156534568-156535280	K562	blood:	n/a	n/a
37	NFIC	chr3:156533560-156536281	GM12878	blood:	n/a	n/a
38	SP1	chr3:156534465-156535380	GM12878	blood:	n/a	chr3:156534823-156534834
39	MAX	chr3:156533934-156535568	MCF-7	breast:	n/a	n/a
40	USF1	chr3:156534772-156535314	A549	lung:	n/a	n/a
41	POLR2A	chr3:156533377-156536265	GM18505	blood:	n/a	n/a
42	KAP1	chr3:156534586-156535822	U2OS	brain:	n/a	chr3:156535424-156535433
43	POLR2A	chr3:156534018-156535555	H1-hESC	embryonic stem cell:	n/a	n/a
44	RAD21	chr3:156533575-156536532	IMR90	lung:	n/a	chr3:156536331-156536343
45	E2F6	chr3:156534461-156535390	K562	blood:	n/a	chr3:156534855-156534864 chr3:156534852-156534862 chr3:156534931-156534942
46	RAD21	chr3:156534553-156535299	A549	lung:	n/a	n/a
47	MAX	chr3:156534553-156535399	NB4	blood:	n/a	n/a
48	CREB1	chr3:156534579-156535344	K562	blood:	n/a	n/a
49	MTA3	chr3:156534460-156536170	GM12878	blood:	n/a	n/a
50	RUNX3	chr3:156534455-156535608	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:79824042..79825935-chr3:156533606..156535804,2	MCF-7	breast:
2	chr3:156533499..156536526-chr3:156891417..156894235,3	MCF-7	breast:
3	chr3:156388866..156397270-chr3:156524172..156537549,71	MCF-7	breast:
4	chr3:156398277..156399955-chr3:156533630..156535549,2	MCF-7	breast:
5	chr15:89631315..89632142-chr3:156534403..156535337,2	Hela-S3	cervix:
6	chr3:156397478..156399872-chr3:156533478..156536173,2	MCF-7	breast:
7	chr3:156393138..156393870-chr3:156535105..156535672,2	Hela-S3	cervix:
8	chr3:156534984..156535558-chr5:90609305..90610027,2	Hela-S3	cervix:
9	chr3:156534879..156535549-chr6:34855191..34855795,2	Hela-S3	cervix:
10	chr3:156533566..156537799-chr3:156875553..156879495,5	MCF-7	breast:
11	chr2:61107848..61108460-chr3:156534914..156535707,2	Hela-S3	cervix:
12	chr3:156533151..156536166-chr3:156876536..156878958,4	MCF-7	breast:
13	chr3:156389670..156395497-chr3:156530360..156537244,22	MCF-7	breast:
14	chr1:150551352..150551872-chr3:156535087..156535774,2	Hela-S3	cervix:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-3	chr3:156534676-156536308	NONHSAT092863

Variant related genes	Relation type
LINC00886	TF binding region
ENSG00000262413	Chromatin interaction
ENSG00000140526	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000228414	Chromatin interaction
ENSG00000261407	Chromatin interaction
ENSG00000222675	Chromatin interaction
ENSG00000243176	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 198 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs17380639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17381024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17381930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17382208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17440227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17440656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17440944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17442011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17442045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62273860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62273893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62273895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62273899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273901	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62273902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62273921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273955	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62273959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62274040	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62274041	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62274042	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62274046	1.00[AMR][1000 genomes]
rs62274047	0.89[AMR][1000 genomes]
rs62275160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275165	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62275166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275170	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62275171	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275173	1.00[AMR][1000 genomes]
rs62275174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62275189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275250	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62275253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275574	1.00[AMR][1000 genomes]
rs62275575	1.00[AMR][1000 genomes]
rs62275576	1.00[AMR][1000 genomes]
rs62275577	1.00[AMR][1000 genomes]
rs62275579	0.87[AMR][1000 genomes]
rs62275580	1.00[AMR][1000 genomes]
rs62275581	1.00[AMR][1000 genomes]
rs62275646	1.00[AMR][1000 genomes]
rs62275647	1.00[AMR][1000 genomes]
rs62275648	1.00[AMR][1000 genomes]
rs62275650	1.00[AMR][1000 genomes]
rs62275651	0.81[EUR][1000 genomes]
rs62275653	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62275760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62275798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275837	1.00[AFR][1000 genomes]
rs62275839	1.00[AFR][1000 genomes]
rs62275841	1.00[AFR][1000 genomes]
rs62275842	1.00[AFR][1000 genomes]
rs62275843	1.00[AFR][1000 genomes]
rs62275844	1.00[AFR][1000 genomes]
rs62276613	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62276615	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62276616	1.00[AMR][1000 genomes]
rs62276618	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276619	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276620	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276621	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276622	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276623	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276624	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62276625	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277073	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277074	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277075	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277081	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277084	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62277096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277098	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62277099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277149	1.00[AMR][1000 genomes]
rs62277150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277152	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62277159	0.86[EUR][1000 genomes]
rs62277391	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277392	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277396	1.00[AMR][1000 genomes]
rs62277398	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278060	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62278066	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7651446	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156533200-156535400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr3:156533200-156536200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:156533400-156535400	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr3:156533400-156535600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr3:156533600-156535400	Active TSS	Colon Smooth Muscle	Colon
6	chr3:156533600-156535600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr3:156533600-156535600	Active TSS	Brain Anterior Caudate	brain
8	chr3:156533600-156535600	Active TSS	Brain Hippocampus Middle	brain
9	chr3:156533600-156535800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:156533600-156536000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:156533600-156536200	Active TSS	Rectal Smooth Muscle	rectum
12	chr3:156533800-156535400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:156533800-156535400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
14	chr3:156533800-156535400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:156533800-156535400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:156533800-156535400	Active TSS	Brain Cingulate Gyrus	brain
17	chr3:156533800-156535400	Active TSS	Ovary	ovary
18	chr3:156533800-156535400	Active TSS	Psoas Muscle	Psoas
19	chr3:156533800-156535600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:156533800-156535600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr3:156533800-156535600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr3:156533800-156535600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:156533800-156535600	Active TSS	Thymus	Thymus
24	chr3:156533800-156535600	Flanking Active TSS	HMEC	breast
25	chr3:156533800-156535800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:156533800-156536000	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr3:156534000-156535400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr3:156534000-156535400	Active TSS	Aorta	Aorta
29	chr3:156534000-156535400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
30	chr3:156534000-156535400	Active TSS	Sigmoid Colon	Sigmoid Colon
31	chr3:156534000-156535600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:156534000-156535600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:156534000-156535600	Active TSS	Brain Angular Gyrus	brain
34	chr3:156534000-156535800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr3:156534200-156535400	Active TSS	Primary B cells from peripheral blood	blood
36	chr3:156534200-156535400	Active TSS	Esophagus	oesophagus
37	chr3:156534200-156535400	Active TSS	Lung	lung
38	chr3:156534200-156535400	Active TSS	Small Intestine	intestine
39	chr3:156534200-156535400	Active TSS	Spleen	Spleen
40	chr3:156534200-156535400	Active TSS	A549	lung
41	chr3:156534200-156535800	Active TSS	Liver	Liver
42	chr3:156534400-156535400	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr3:156534400-156535400	Flanking Active TSS	Placenta	Placenta
44	chr3:156534400-156535400	Active TSS	Left Ventricle	heart
45	chr3:156534400-156535400	Active TSS	Pancreas	Pancrea
46	chr3:156534400-156535400	Active TSS	Placenta Amnion	Placenta Amnion
47	chr3:156534400-156535600	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr3:156534400-156535600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:156534400-156535600	Active TSS	Right Atrium	heart
50	chr3:156534400-156535600	Active TSS	Right Ventricle	heart

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Variant report

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