Variant report

Variant	rs62277159
Chromosome Location	chr3:156526082-156526083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156388866..156397270-chr3:156524172..156537549,71	MCF-7	breast:
2	chr3:156526016..156527840-chr3:156529413..156531973,3	MCF-7	breast:
3	chr3:156526056..156528184-chr3:156543085..156546076,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction
ENSG00000197980	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs12635422	0.88[ASN][1000 genomes]
rs17380639	0.81[EUR][1000 genomes]
rs17381024	0.81[EUR][1000 genomes]
rs17381930	0.84[EUR][1000 genomes]
rs17382208	0.84[EUR][1000 genomes]
rs17440227	0.81[EUR][1000 genomes]
rs17440656	0.84[EUR][1000 genomes]
rs17440944	0.84[EUR][1000 genomes]
rs57684115	0.88[ASN][1000 genomes]
rs58324366	0.88[ASN][1000 genomes]
rs62273860	0.86[EUR][1000 genomes]
rs62273861	0.86[EUR][1000 genomes]
rs62273862	0.86[EUR][1000 genomes]
rs62273895	0.86[EUR][1000 genomes]
rs62273896	0.86[EUR][1000 genomes]
rs62273897	0.86[EUR][1000 genomes]
rs62273898	0.81[EUR][1000 genomes]
rs62273899	0.86[EUR][1000 genomes]
rs62273900	0.86[EUR][1000 genomes]
rs62273902	0.86[EUR][1000 genomes]
rs62273904	0.86[EUR][1000 genomes]
rs62273905	0.86[EUR][1000 genomes]
rs62273906	0.84[EUR][1000 genomes]
rs62273907	0.86[EUR][1000 genomes]
rs62273908	0.86[EUR][1000 genomes]
rs62273909	0.84[EUR][1000 genomes]
rs62273910	0.86[EUR][1000 genomes]
rs62273912	0.86[EUR][1000 genomes]
rs62273913	0.86[EUR][1000 genomes]
rs62273914	0.86[EUR][1000 genomes]
rs62273915	0.86[EUR][1000 genomes]
rs62273916	0.86[EUR][1000 genomes]
rs62273917	0.86[EUR][1000 genomes]
rs62273918	0.86[EUR][1000 genomes]
rs62273919	0.86[EUR][1000 genomes]
rs62273920	0.86[EUR][1000 genomes]
rs62273921	0.84[EUR][1000 genomes]
rs62273922	0.84[EUR][1000 genomes]
rs62273955	0.84[EUR][1000 genomes]
rs62273956	0.84[EUR][1000 genomes]
rs62273958	0.84[EUR][1000 genomes]
rs62273959	0.84[EUR][1000 genomes]
rs62275160	0.84[EUR][1000 genomes]
rs62275163	0.84[EUR][1000 genomes]
rs62275164	0.84[EUR][1000 genomes]
rs62275165	0.81[EUR][1000 genomes]
rs62275166	0.84[EUR][1000 genomes]
rs62275170	0.81[EUR][1000 genomes]
rs62275171	0.84[EUR][1000 genomes]
rs62275174	0.84[EUR][1000 genomes]
rs62275175	0.84[EUR][1000 genomes]
rs62275176	0.84[EUR][1000 genomes]
rs62275177	0.84[EUR][1000 genomes]
rs62275178	0.84[EUR][1000 genomes]
rs62275179	0.84[EUR][1000 genomes]
rs62275180	0.84[EUR][1000 genomes]
rs62275182	0.84[EUR][1000 genomes]
rs62275185	0.84[EUR][1000 genomes]
rs62275186	0.84[EUR][1000 genomes]
rs62275189	0.84[EUR][1000 genomes]
rs62275190	0.84[EUR][1000 genomes]
rs62275238	0.84[EUR][1000 genomes]
rs62275243	0.84[EUR][1000 genomes]
rs62275244	0.84[EUR][1000 genomes]
rs62275245	0.84[EUR][1000 genomes]
rs62275246	0.84[EUR][1000 genomes]
rs62275247	0.84[EUR][1000 genomes]
rs62275248	0.84[EUR][1000 genomes]
rs62275249	0.84[EUR][1000 genomes]
rs62275250	0.84[EUR][1000 genomes]
rs62275251	0.84[EUR][1000 genomes]
rs62275252	0.84[EUR][1000 genomes]
rs62277085	0.81[EUR][1000 genomes]
rs62277086	0.81[EUR][1000 genomes]
rs62277087	0.81[EUR][1000 genomes]
rs62277088	0.81[EUR][1000 genomes]
rs62277089	0.81[EUR][1000 genomes]
rs62277090	0.81[EUR][1000 genomes]
rs62277091	0.81[EUR][1000 genomes]
rs62277092	0.81[EUR][1000 genomes]
rs62277096	0.81[EUR][1000 genomes]
rs62277097	0.81[EUR][1000 genomes]
rs62277099	0.81[EUR][1000 genomes]
rs62277140	0.81[EUR][1000 genomes]
rs62277141	0.81[EUR][1000 genomes]
rs62277142	0.81[EUR][1000 genomes]
rs62277143	0.81[EUR][1000 genomes]
rs62277144	0.81[EUR][1000 genomes]
rs62277145	0.81[EUR][1000 genomes]
rs62277146	0.81[EUR][1000 genomes]
rs62277147	0.81[EUR][1000 genomes]
rs62277148	0.81[EUR][1000 genomes]
rs62277150	0.86[EUR][1000 genomes]
rs62277153	0.86[EUR][1000 genomes]
rs62277155	0.86[EUR][1000 genomes]
rs62277156	0.86[EUR][1000 genomes]
rs62277157	0.86[EUR][1000 genomes]
rs62277158	0.86[EUR][1000 genomes]
rs62278060	0.86[EUR][1000 genomes]
rs62278061	0.86[EUR][1000 genomes]
rs62278062	0.86[EUR][1000 genomes]
rs62278064	0.86[EUR][1000 genomes]
rs62278065	0.81[EUR][1000 genomes]
rs62278066	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156502800-156528400	Weak transcription	Esophagus	oesophagus
2	chr3:156502800-156529000	Weak transcription	Liver	Liver
3	chr3:156511200-156529000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:156511400-156530400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:156517400-156529000	Weak transcription	A549	lung
6	chr3:156518000-156529800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:156520200-156530400	Weak transcription	Right Ventricle	heart
8	chr3:156522200-156530400	Weak transcription	Gastric	stomach
9	chr3:156522400-156529000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:156523000-156526600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:156523400-156527400	Weak transcription	GM12878-XiMat	blood
12	chr3:156524000-156526600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:156524000-156527200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:156524400-156527000	Enhancers	Osteobl	bone
15	chr3:156524800-156528200	Enhancers	NHEK	skin
16	chr3:156525000-156526400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:156525000-156529000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:156525200-156527400	Weak transcription	Fetal Intestine Small	intestine
19	chr3:156525200-156528400	Weak transcription	Fetal Intestine Large	intestine
20	chr3:156525400-156526400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:156525400-156526800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:156525400-156527600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:156525600-156526200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:156525600-156526200	Enhancers	K562	blood
25	chr3:156525600-156526400	Enhancers	HMEC	breast
26	chr3:156525600-156526800	Enhancers	NHDF-Ad	bronchial
27	chr3:156525600-156527800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:156525800-156526200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr3:156525800-156526200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:156525800-156526400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:156525800-156526400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:156525800-156526400	Enhancers	NH-A	brain
33	chr3:156525800-156526800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:156526000-156526200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr3:156526000-156526200	Enhancers	HSMMtube	muscle
36	chr3:156526000-156526400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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