Variant report

Variant	rs62277152
Chromosome Location	chr3:156516435-156516436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156515560..156517669-chr3:156523840..156525586,2	K562	blood:
2	chr3:156487668..156490241-chr3:156516348..156519090,2	K562	blood:
3	chr3:156515946..156518416-chr3:156543029..156545847,2	MCF-7	breast:
4	chr3:156508375..156510192-chr3:156514735..156517661,2	MCF-7	breast:
5	chr3:156508939..156511033-chr3:156513884..156516615,2	K562	blood:
6	chr3:156498174..156501165-chr3:156515710..156519959,5	K562	blood:
7	chr3:156515993..156518701-chr3:156522150..156523774,2	K562	blood:
8	chr3:156515429..156517896-chr3:156519184..156521324,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197980	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs17380639	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17381024	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17381930	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17382208	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17440227	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17440656	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17440944	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17442011	1.00[AFR][1000 genomes]
rs17442045	1.00[AFR][1000 genomes]
rs62273860	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273861	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273862	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273892	1.00[AFR][1000 genomes]
rs62273893	1.00[AFR][1000 genomes]
rs62273895	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273896	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273897	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273898	1.00[AFR][1000 genomes]
rs62273899	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273900	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273901	1.00[AFR][1000 genomes]
rs62273902	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273904	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273905	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273906	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62273907	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273908	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273909	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62273910	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273912	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273913	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273914	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273915	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273916	0.84[EUR][1000 genomes]
rs62273917	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273918	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273919	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273920	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62273921	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62273922	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62273955	0.82[EUR][1000 genomes]
rs62273956	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62273958	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62273959	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275160	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275163	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275164	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275165	1.00[AFR][1000 genomes]
rs62275166	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275171	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275174	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275175	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275176	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275177	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275178	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275179	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275180	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275181	1.00[AFR][1000 genomes]
rs62275182	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275185	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275186	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275187	1.00[AFR][1000 genomes]
rs62275189	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275190	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275191	1.00[AFR][1000 genomes]
rs62275238	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275241	1.00[AFR][1000 genomes]
rs62275243	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275244	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275245	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275246	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275247	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275248	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275249	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275250	0.82[EUR][1000 genomes]
rs62275251	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275252	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62275253	1.00[AFR][1000 genomes]
rs62275255	1.00[AFR][1000 genomes]
rs62275256	1.00[AFR][1000 genomes]
rs62275257	1.00[AFR][1000 genomes]
rs62275258	1.00[AFR][1000 genomes]
rs62275259	1.00[AFR][1000 genomes]
rs62275760	1.00[AFR][1000 genomes]
rs62275761	1.00[AFR][1000 genomes]
rs62275762	1.00[AFR][1000 genomes]
rs62275764	1.00[AFR][1000 genomes]
rs62275766	1.00[AFR][1000 genomes]
rs62275767	1.00[AFR][1000 genomes]
rs62275795	1.00[AFR][1000 genomes]
rs62275796	1.00[AFR][1000 genomes]
rs62275797	1.00[AFR][1000 genomes]
rs62275798	1.00[AFR][1000 genomes]
rs62275799	1.00[AFR][1000 genomes]
rs62275800	1.00[AFR][1000 genomes]
rs62275801	1.00[AFR][1000 genomes]
rs62275804	1.00[AFR][1000 genomes]
rs62275805	1.00[AFR][1000 genomes]
rs62275806	1.00[AFR][1000 genomes]
rs62275808	1.00[AFR][1000 genomes]
rs62275809	1.00[AFR][1000 genomes]
rs62275810	1.00[AFR][1000 genomes]
rs62275811	1.00[AFR][1000 genomes]
rs62275812	1.00[AFR][1000 genomes]
rs62275813	1.00[AFR][1000 genomes]
rs62275829	1.00[AFR][1000 genomes]
rs62275830	1.00[AFR][1000 genomes]
rs62275837	1.00[AFR][1000 genomes]
rs62275839	1.00[AFR][1000 genomes]
rs62275841	1.00[AFR][1000 genomes]
rs62275842	1.00[AFR][1000 genomes]
rs62275843	1.00[AFR][1000 genomes]
rs62275844	1.00[AFR][1000 genomes]
rs62277076	1.00[AFR][1000 genomes]
rs62277077	1.00[AFR][1000 genomes]
rs62277078	1.00[AFR][1000 genomes]
rs62277079	1.00[AFR][1000 genomes]
rs62277080	1.00[AFR][1000 genomes]
rs62277085	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277086	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277087	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277088	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277089	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277090	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277091	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277092	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277093	1.00[AFR][1000 genomes]
rs62277096	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277097	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277099	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277140	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277141	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277142	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277143	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277144	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277145	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277146	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277147	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277148	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277150	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277153	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277155	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277156	0.84[EUR][1000 genomes]
rs62277157	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62277158	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62278060	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62278061	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62278062	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62278064	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62278065	1.00[AFR][1000 genomes]
rs62278066	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156502800-156528400	Weak transcription	Esophagus	oesophagus
2	chr3:156502800-156529000	Weak transcription	Liver	Liver
3	chr3:156511000-156519600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:156511200-156516600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:156511200-156529000	Weak transcription	Primary T cells from cord blood	blood
6	chr3:156511400-156518800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr3:156511400-156530400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:156511600-156519600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:156514000-156519600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:156514200-156517200	Weak transcription	A549	lung
11	chr3:156514200-156517600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:156514400-156517400	Weak transcription	HMEC	breast
13	chr3:156514400-156517800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:156514400-156525400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:156514400-156525800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:156515800-156517600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:156516400-156517600	Weak transcription	NHEK	skin

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