Variant report

Variant	rs62277084
Chromosome Location	chr3:156483664-156483665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156478908..156481855-chr3:156482060..156485286,3	MCF-7	breast:
2	chr3:156481334..156484015-chr3:156486601..156488604,3	MCF-7	breast:
3	chr3:156483555..156485100-chr3:156490835..156492719,2	MCF-7	breast:

Extended variants
information (count: 194 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs17380639	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17381024	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17381930	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17382208	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17440227	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17440656	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17440944	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17442011	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17442045	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2101167	1.00[ASN][1000 genomes]
rs55726754	1.00[ASN][1000 genomes]
rs56126252	1.00[ASN][1000 genomes]
rs60561257	1.00[ASN][1000 genomes]
rs62273860	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273861	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273862	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273892	1.00[AMR][1000 genomes]
rs62273893	1.00[AMR][1000 genomes]
rs62273895	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273896	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273897	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273898	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273899	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273900	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273901	0.89[AMR][1000 genomes]
rs62273902	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273904	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273905	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273906	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62273907	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273908	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273909	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62273910	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273912	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273913	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273914	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273915	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273916	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273917	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273918	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273919	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273920	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273921	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62273922	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62273955	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62273956	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62273958	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62273959	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62274040	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62274041	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62274042	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62274046	1.00[AMR][1000 genomes]
rs62274047	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275160	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275163	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275164	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275165	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62275166	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275170	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62275171	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275173	1.00[AMR][1000 genomes]
rs62275174	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275175	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275176	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275177	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275178	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275179	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275180	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275181	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275182	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275185	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275186	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275187	1.00[AMR][1000 genomes]
rs62275189	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275190	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275191	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275238	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275241	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62275243	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275244	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275245	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275246	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275247	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275248	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275249	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275250	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275251	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275252	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275253	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275255	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275256	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275257	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275258	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275259	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275574	1.00[AMR][1000 genomes]
rs62275575	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62275576	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62275577	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62275579	0.87[AMR][1000 genomes]
rs62275580	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275581	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275646	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275647	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275648	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275650	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275651	0.90[EUR][1000 genomes]
rs62275653	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62275760	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275761	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275762	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275764	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275766	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275767	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275795	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275796	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275797	1.00[AMR][1000 genomes]
rs62275798	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275799	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275800	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275801	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275804	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275805	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275806	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275808	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275809	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275810	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275811	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275812	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275813	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62275829	1.00[AMR][1000 genomes]
rs62275830	1.00[AMR][1000 genomes]
rs62276613	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62276615	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62276616	1.00[AMR][1000 genomes]
rs62276618	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62276619	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62276620	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62276621	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62276622	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62276623	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62276624	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62276625	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277073	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277074	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277075	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277076	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277077	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277078	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277079	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277080	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277081	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277085	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277086	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277087	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277088	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277089	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277090	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277091	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277092	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277093	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277096	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277097	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277098	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277099	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277140	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277141	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277142	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277143	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277144	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277145	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277146	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277147	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277148	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277149	1.00[AMR][1000 genomes]
rs62277150	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277153	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277155	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277156	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277157	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277158	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277391	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277392	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62277396	1.00[AMR][1000 genomes]
rs62277398	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62278060	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62278061	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62278062	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62278064	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62278065	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278066	0.87[EUR][1000 genomes]
rs73012025	1.00[ASN][1000 genomes]
rs7651446	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156478000-156483800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:156481000-156485400	Weak transcription	HSMMtube	muscle
3	chr3:156481000-156490400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:156481000-156490600	Weak transcription	NH-A	brain
5	chr3:156482200-156487200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156483200-156488000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:156483400-156486800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:156483400-156487200	Weak transcription	NHDF-Ad	bronchial
9	chr3:156483400-156487200	Weak transcription	Osteobl	bone
10	chr3:156483400-156487400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:156483400-156487600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:156483400-156487600	Weak transcription	NHEK	skin
13	chr3:156483400-156487800	Weak transcription	HMEC	breast
14	chr3:156483400-156490400	Weak transcription	HUVEC	blood vessel
15	chr3:156483600-156487600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:156483600-156487600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:156483600-156490200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:156483600-156490600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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