Variant report

Variant	rs62277330
Chromosome Location	chr3:154951020-154951021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:154945250..154948385-chr3:154948897..154951572,3	MCF-7	breast:
2	chr3:154948903..154951174-chr3:154971402..154973634,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1056670	0.80[EUR][1000 genomes]
rs1385481	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62277293	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277318	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277324	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277325	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277328	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277331	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277333	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277334	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62279076	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279078	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279081	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279082	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62279083	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62279092	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62279095	0.81[EUR][1000 genomes]
rs62279098	0.80[EUR][1000 genomes]
rs62279099	0.81[EUR][1000 genomes]
rs62279100	0.80[EUR][1000 genomes]
rs62279128	0.80[EUR][1000 genomes]
rs6792632	0.80[EUR][1000 genomes]
rs6792930	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv829762	chr3:154879350-155052986	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154947600-154952200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:154947600-154952200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:154947600-154952400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:154948000-154953200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:154949400-154951800	Enhancers	HSMM	muscle
6	chr3:154949400-154952000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:154949400-154952000	Enhancers	NHDF-Ad	bronchial
8	chr3:154949600-154951400	Enhancers	Fetal Muscle Leg	muscle
9	chr3:154949600-154951400	Enhancers	K562	blood
10	chr3:154949600-154951800	Enhancers	Osteobl	bone
11	chr3:154949600-154952000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr3:154949800-154951200	Enhancers	Right Atrium	heart
13	chr3:154949800-154951400	Enhancers	Adipose Nuclei	Adipose
14	chr3:154949800-154951400	Enhancers	Colon Smooth Muscle	Colon
15	chr3:154949800-154951400	Enhancers	Pancreas	Pancrea
16	chr3:154949800-154951600	Enhancers	HMEC	breast
17	chr3:154949800-154951600	Enhancers	HSMMtube	muscle
18	chr3:154949800-154952200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:154950000-154951200	Enhancers	Stomach Mucosa	stomach
20	chr3:154950000-154951400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:154950000-154951400	Enhancers	NHLF	lung
22	chr3:154950000-154951800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:154950200-154951400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr3:154950200-154951400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr3:154950200-154951400	Enhancers	Rectal Smooth Muscle	rectum
26	chr3:154950200-154951400	Enhancers	NH-A	brain
27	chr3:154950200-154951600	Enhancers	Fetal Lung	lung
28	chr3:154950200-154951800	Enhancers	Stomach Smooth Muscle	stomach
29	chr3:154950200-154952000	Weak transcription	Psoas Muscle	Psoas
30	chr3:154950400-154951200	Enhancers	Esophagus	oesophagus
31	chr3:154950400-154951400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:154950400-154951400	Enhancers	Liver	Liver
33	chr3:154950400-154951600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr3:154950400-154951600	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr3:154950600-154951400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:154950600-154951400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:154950600-154951400	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr3:154950600-154951600	Enhancers	Fetal Heart	heart
39	chr3:154950800-154951200	Enhancers	Fetal Intestine Small	intestine
40	chr3:154950800-154951600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr3:154951000-154951400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:154951000-154951400	Enhancers	Brain Angular Gyrus	brain
43	chr3:154951000-154951400	Enhancers	Brain Cingulate Gyrus	brain
44	chr3:154951000-154951400	Enhancers	Brain Hippocampus Middle	brain
45	chr3:154951000-154951400	Enhancers	Fetal Intestine Large	intestine
46	chr3:154951000-154951400	Enhancers	Fetal Kidney	kidney
47	chr3:154951000-154951400	Enhancers	Gastric	stomach
48	chr3:154951000-154958000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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