Variant report

Variant	rs62279092
Chromosome Location	chr3:154999198-154999199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:154750287..154752198-chr3:154998853..155000708,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1056670	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1134899	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1385481	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62277293	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62277318	0.81[EUR][1000 genomes]
rs62277324	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62277325	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62277328	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62277330	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62277331	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62277333	0.83[EUR][1000 genomes]
rs62277334	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62279076	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62279078	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62279081	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62279082	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62279083	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62279095	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62279096	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62279097	0.86[EUR][1000 genomes]
rs62279098	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62279099	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62279100	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62279101	0.86[EUR][1000 genomes]
rs62279128	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62279129	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62279130	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778188	0.94[ASN][1000 genomes]
rs6792632	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792930	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637871	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv829762	chr3:154879350-155052986	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154995600-154999200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr3:154996200-154999200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr3:154998000-155001400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:154998000-155001800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:154998200-154999600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:154998200-154999800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:154998800-154999600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:154998800-154999800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:154998800-155002200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:154999000-154999600	Enhancers	K562	blood

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