Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10511189	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1520654	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16843627	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16843634	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16843699	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2271972	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35902489	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3732893	0.85[EUR][1000 genomes]
rs3773915	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3773917	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3773918	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62280636	0.82[EUR][1000 genomes]
rs62280637	0.84[EUR][1000 genomes]
rs62282871	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62282873	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62282875	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62282885	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62282886	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62282887	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62282888	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62282889	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6441595	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72932462	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7611378	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7632064	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7634592	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2754039	chr3:100882310-100981310	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100954800-100992600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:100955000-100994000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr3:100958800-101012800	Weak transcription	Left Ventricle	heart
4	chr3:100973800-100990600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:100975400-100997800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:100976600-100981200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:100976800-100979600	Weak transcription	HSMMtube	muscle
8	chr3:100977800-100979600	Enhancers	Aorta	Aorta
9	chr3:100978000-100979600	Enhancers	Right Atrium	heart
10	chr3:100978000-100980000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:100978200-100980200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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