Variant report

Variant	rs62280636
Chromosome Location	chr3:100949331-100949332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10451923	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10511189	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1520654	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16843627	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16843634	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16843699	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16843817	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17487	0.87[ASN][1000 genomes]
rs1986294	0.87[ASN][1000 genomes]
rs2271972	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2449822	0.92[ASN][1000 genomes]
rs35902489	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3732893	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3773915	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3773917	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3773918	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4553955	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs475521	0.89[ASN][1000 genomes]
rs476090	0.92[ASN][1000 genomes]
rs476491	0.89[ASN][1000 genomes]
rs478173	0.91[ASN][1000 genomes]
rs479522	0.92[ASN][1000 genomes]
rs479723	0.92[ASN][1000 genomes]
rs481809	0.92[ASN][1000 genomes]
rs482055	0.88[ASN][1000 genomes]
rs482436	0.92[ASN][1000 genomes]
rs482976	0.93[ASN][1000 genomes]
rs483947	0.89[ASN][1000 genomes]
rs485130	0.92[ASN][1000 genomes]
rs489455	0.87[ASN][1000 genomes]
rs500480	0.89[ASN][1000 genomes]
rs501702	0.87[ASN][1000 genomes]
rs505037	0.89[ASN][1000 genomes]
rs513188	0.87[ASN][1000 genomes]
rs513994	0.92[ASN][1000 genomes]
rs515307	0.92[ASN][1000 genomes]
rs516312	0.92[ASN][1000 genomes]
rs517698	0.87[ASN][1000 genomes]
rs520879	0.89[ASN][1000 genomes]
rs522749	0.80[ASN][1000 genomes]
rs527836	0.92[ASN][1000 genomes]
rs530566	0.89[ASN][1000 genomes]
rs535881	0.92[ASN][1000 genomes]
rs536561	0.92[ASN][1000 genomes]
rs538834	0.92[ASN][1000 genomes]
rs545322	0.87[ASN][1000 genomes]
rs546090	0.87[ASN][1000 genomes]
rs550241	0.89[ASN][1000 genomes]
rs554215	0.87[ASN][1000 genomes]
rs559042	0.89[ASN][1000 genomes]
rs559400	0.86[ASN][1000 genomes]
rs563909	0.87[ASN][1000 genomes]
rs567983	0.92[ASN][1000 genomes]
rs569339	0.89[ASN][1000 genomes]
rs570318	0.87[ASN][1000 genomes]
rs571883	0.89[ASN][1000 genomes]
rs573908	0.87[ASN][1000 genomes]
rs575317	0.87[ASN][1000 genomes]
rs62280607	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62280609	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62280631	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62280633	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62280637	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280663	0.84[EUR][1000 genomes]
rs62280664	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62280665	0.84[EUR][1000 genomes]
rs62280669	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62280670	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62280671	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62280673	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62280674	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62280675	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62280719	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62280720	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62280721	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62280722	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62280725	0.80[EUR][1000 genomes]
rs62282871	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62282872	0.82[EUR][1000 genomes]
rs62282873	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62282875	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62282885	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62282886	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62282887	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62282888	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62282889	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62282890	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6441595	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6793895	0.82[AFR][1000 genomes]
rs6796058	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6798685	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs693428	0.93[ASN][1000 genomes]
rs72932462	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7611378	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7621506	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7632064	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7634592	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2754039	chr3:100882310-100981310	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100942200-100967400	Weak transcription	HSMMtube	muscle
2	chr3:100944200-100949800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:100944600-100960000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:100948400-100950200	Enhancers	Colon Smooth Muscle	Colon
5	chr3:100948600-100949800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:100948600-100950000	Enhancers	Fetal Stomach	stomach
7	chr3:100949000-100950400	Enhancers	Rectal Smooth Muscle	rectum

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