Variant report

Variant	rs62280721
Chromosome Location	chr3:101143792-101143793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10451923	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10511189	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1520654	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16843627	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16843634	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16843699	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16843817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2271972	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35902489	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3732893	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3773915	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3773917	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3773918	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4260407	0.96[EUR][1000 genomes]
rs4553955	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280636	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62280637	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62280663	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280664	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280665	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62280669	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62280670	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62280671	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280673	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280674	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280675	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62280725	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280726	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280728	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62280731	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62280733	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62280735	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62280737	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62280745	0.97[EUR][1000 genomes]
rs62280747	0.96[EUR][1000 genomes]
rs62282871	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62282873	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62282875	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62282885	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62282886	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62282887	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62282888	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62282889	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62282890	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62282892	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441595	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6796058	0.82[AMR][1000 genomes]
rs6798685	0.82[AMR][1000 genomes]
rs72487765	0.84[EUR][1000 genomes]
rs72932462	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7611378	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7621506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7622461	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7632064	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7634592	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9790303	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101107200-101161200	Weak transcription	Aorta	Aorta
2	chr3:101111600-101145800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:101128600-101146200	Weak transcription	Dnd41	blood
4	chr3:101129200-101160000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:101133600-101160600	Weak transcription	K562	blood
6	chr3:101135000-101144200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:101136800-101144200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:101141000-101185600	Weak transcription	Right Ventricle	heart
9	chr3:101141200-101144200	Weak transcription	Primary B cells from cord blood	blood
10	chr3:101141200-101160000	Weak transcription	Gastric	stomach
11	chr3:101142200-101145000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr3:101142200-101146000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:101142200-101146200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:101142400-101143800	ZNF genes & repeats	Fetal Stomach	stomach
15	chr3:101142400-101144200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
16	chr3:101142400-101144400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:101142400-101146000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr3:101142400-101146400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr3:101142600-101143800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:101142600-101144600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr3:101143000-101143800	Genic enhancers	Spleen	Spleen
22	chr3:101143200-101143800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
23	chr3:101143200-101143800	Genic enhancers	Pancreas	Pancrea
24	chr3:101143200-101145200	Enhancers	Thymus	Thymus
25	chr3:101143200-101146200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr3:101143400-101144600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:101143400-101145000	Enhancers	Primary T cells from cord blood	blood
28	chr3:101143400-101145800	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr3:101143600-101144200	Weak transcription	Fetal Thymus	thymus
30	chr3:101143600-101144600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr3:101143600-101160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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