Variant report

Variant	rs4260407
Chromosome Location	chr3:101245806-101245807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10451923	0.93[EUR][1000 genomes]
rs1078154	1.00[YRI][hapmap]
rs11918335	0.81[ASN][1000 genomes]
rs11919906	1.00[ASN][1000 genomes]
rs13065665	0.89[ASW][hapmap];0.88[CHB][hapmap];0.86[GIH][hapmap];0.92[MEX][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13078121	0.89[ASW][hapmap];0.88[CHB][hapmap];0.86[GIH][hapmap];0.92[MEX][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13097625	0.88[CHB][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap]
rs13347262	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1405781	0.81[ASN][1000 genomes]
rs16843699	0.83[EUR][1000 genomes]
rs16843817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs1880982	0.81[ASN][1000 genomes]
rs1976944	0.88[CHB][hapmap]
rs34774691	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34930373	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3762735	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3773915	0.83[EUR][1000 genomes]
rs4553955	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs62280663	0.93[EUR][1000 genomes]
rs62280664	0.93[EUR][1000 genomes]
rs62280665	0.93[EUR][1000 genomes]
rs62280669	0.91[EUR][1000 genomes]
rs62280670	0.93[EUR][1000 genomes]
rs62280671	0.93[EUR][1000 genomes]
rs62280673	0.93[EUR][1000 genomes]
rs62280674	0.93[EUR][1000 genomes]
rs62280675	0.93[EUR][1000 genomes]
rs62280719	0.96[EUR][1000 genomes]
rs62280720	0.96[EUR][1000 genomes]
rs62280721	0.96[EUR][1000 genomes]
rs62280722	0.94[EUR][1000 genomes]
rs62280725	0.94[EUR][1000 genomes]
rs62280726	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62280728	0.99[EUR][1000 genomes]
rs62280731	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62280733	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62280735	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62280737	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62280745	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280746	1.00[ASN][1000 genomes]
rs62280747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282885	0.83[EUR][1000 genomes]
rs62282886	0.83[EUR][1000 genomes]
rs62282887	0.83[EUR][1000 genomes]
rs62282888	0.83[EUR][1000 genomes]
rs62282889	0.83[EUR][1000 genomes]
rs62282890	0.89[EUR][1000 genomes]
rs62282892	0.88[EUR][1000 genomes]
rs6441619	1.00[YRI][hapmap]
rs6762367	0.88[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6777720	0.80[ASN][1000 genomes]
rs6792847	1.00[YRI][hapmap]
rs71315243	0.81[AMR][1000 genomes]
rs71315244	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72487765	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7611378	0.83[EUR][1000 genomes]
rs7621506	0.96[EUR][1000 genomes]
rs7622461	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7632449	1.00[YRI][hapmap]
rs9790303	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101239200-101252000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:101240600-101251000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:101241800-101247600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:101242200-101247400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:101242200-101248000	Weak transcription	Primary T cells from cord blood	blood
6	chr3:101244800-101246200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links