Variant report

Variant	rs11918335
Chromosome Location	chr3:101250278-101250279
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101249370..101250910-chr3:101251294..101253449,2	K562	blood:
2	chr3:101247463..101250897-chr3:101279196..101282627,5	K562	blood:

Variant related genes	Relation type
ENSG00000174173	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11919906	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12636505	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13347262	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405781	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880982	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976944	0.80[AMR][1000 genomes]
rs1986294	0.82[EUR][1000 genomes]
rs2449822	0.81[EUR][1000 genomes]
rs34774691	0.88[ASN][1000 genomes]
rs4260407	0.81[ASN][1000 genomes]
rs475521	0.82[EUR][1000 genomes]
rs476491	0.82[EUR][1000 genomes]
rs478173	0.81[EUR][1000 genomes]
rs482055	0.82[EUR][1000 genomes]
rs483947	0.82[EUR][1000 genomes]
rs489455	0.82[EUR][1000 genomes]
rs500480	0.82[EUR][1000 genomes]
rs501702	0.82[EUR][1000 genomes]
rs505037	0.82[EUR][1000 genomes]
rs513188	0.82[EUR][1000 genomes]
rs517698	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs520879	0.82[EUR][1000 genomes]
rs530566	0.82[EUR][1000 genomes]
rs536561	0.82[EUR][1000 genomes]
rs545322	0.82[EUR][1000 genomes]
rs546090	0.82[EUR][1000 genomes]
rs550241	0.81[EUR][1000 genomes]
rs554215	0.82[EUR][1000 genomes]
rs55633838	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs559042	0.82[EUR][1000 genomes]
rs563909	0.82[EUR][1000 genomes]
rs569339	0.82[EUR][1000 genomes]
rs570318	0.82[EUR][1000 genomes]
rs571883	0.82[EUR][1000 genomes]
rs573908	0.82[EUR][1000 genomes]
rs575317	0.82[EUR][1000 genomes]
rs62280737	0.81[ASN][1000 genomes]
rs62280745	0.81[ASN][1000 genomes]
rs62280746	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62280747	0.81[ASN][1000 genomes]
rs6777720	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9790303	0.84[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101239200-101252000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:101240600-101251000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:101247400-101251400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr3:101247600-101251800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:101248000-101251800	Enhancers	Primary T cells from cord blood	blood
6	chr3:101248200-101251200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:101248200-101251400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:101248200-101251400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr3:101248200-101251800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:101248200-101252000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:101248400-101251000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr3:101248400-101251200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr3:101248400-101251600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:101248600-101250800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr3:101248600-101251200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:101249000-101251200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr3:101249200-101251000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:101249200-101251200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:101249200-101251200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:101249400-101250800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr3:101249400-101251400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:101249400-101252800	Enhancers	HUVEC	blood vessel
23	chr3:101249600-101250400	Weak transcription	Thymus	Thymus
24	chr3:101249600-101251400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:101249600-101254000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:101249800-101250800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr3:101249800-101251200	Enhancers	K562	blood
28	chr3:101250000-101251800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr3:101250000-101252000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr3:101250200-101250400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
31	chr3:101250200-101250600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:101250200-101253200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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