Variant report

Variant	rs6777720
Chromosome Location	chr3:101261838-101261839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101261380..101263536-chr3:101266715..101268479,2	K562	blood:
2	chr3:101231701..101233998-chr3:101261738..101264309,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138468	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11918335	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11919906	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12636505	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13347262	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1405781	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1880982	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1976944	0.82[AMR][1000 genomes]
rs1986294	0.82[EUR][1000 genomes]
rs34774691	0.86[ASN][1000 genomes]
rs4260407	0.80[ASN][1000 genomes]
rs476491	0.82[EUR][1000 genomes]
rs482055	0.81[EUR][1000 genomes]
rs483947	0.82[EUR][1000 genomes]
rs489455	0.82[EUR][1000 genomes]
rs501702	0.82[EUR][1000 genomes]
rs505037	0.82[EUR][1000 genomes]
rs513188	0.82[EUR][1000 genomes]
rs517698	0.82[EUR][1000 genomes]
rs545322	0.82[EUR][1000 genomes]
rs546090	0.82[EUR][1000 genomes]
rs554215	0.82[EUR][1000 genomes]
rs55633838	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs563909	0.82[EUR][1000 genomes]
rs569339	0.82[EUR][1000 genomes]
rs570318	0.82[EUR][1000 genomes]
rs573908	0.82[EUR][1000 genomes]
rs575317	0.82[EUR][1000 genomes]
rs62280737	0.80[ASN][1000 genomes]
rs62280745	0.80[ASN][1000 genomes]
rs62280746	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62280747	0.80[ASN][1000 genomes]
rs9790303	0.83[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101260600-101263600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:101260600-101263600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr3:101260600-101263800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:101260600-101263800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr3:101260600-101263800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:101260800-101263200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr3:101260800-101263400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr3:101260800-101263600	Enhancers	Primary T cells from cord blood	blood
9	chr3:101260800-101263600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr3:101260800-101263800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:101260800-101263800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:101261000-101266600	Weak transcription	HepG2	liver
13	chr3:101261200-101263400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:101261200-101263600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr3:101261400-101262000	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:101261400-101262600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:101261400-101263000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:101261600-101262000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr3:101261600-101263200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr3:101261600-101267400	Weak transcription	K562	blood

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