Variant report

Variant	rs62280746
Chromosome Location	chr3:101242342-101242343
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101236234..101238380-chr3:101241141..101243179,2	K562	blood:
2	chr3:101228925..101232946-chr3:101241178..101244618,3	K562	blood:
3	chr3:101241908..101244826-chr3:101250601..101253357,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RG9MTD1-2	chr3:101240726-101242731	NR_036433

Variant related genes	Relation type
ENSG00000175841	Chromatin interaction
ENSG00000138468	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11918335	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11919906	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636505	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13347262	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1405781	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17487	0.83[EUR][1000 genomes]
rs1880982	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1986294	0.86[EUR][1000 genomes]
rs2449822	0.85[EUR][1000 genomes]
rs4260407	1.00[ASN][1000 genomes]
rs475521	0.86[EUR][1000 genomes]
rs476090	0.83[EUR][1000 genomes]
rs476491	0.86[EUR][1000 genomes]
rs478173	0.85[EUR][1000 genomes]
rs479522	0.83[EUR][1000 genomes]
rs479723	0.82[EUR][1000 genomes]
rs481809	0.83[EUR][1000 genomes]
rs482055	0.86[EUR][1000 genomes]
rs482436	0.83[EUR][1000 genomes]
rs483947	0.86[EUR][1000 genomes]
rs485130	0.83[EUR][1000 genomes]
rs489455	0.86[EUR][1000 genomes]
rs500480	0.86[EUR][1000 genomes]
rs501702	0.86[EUR][1000 genomes]
rs505037	0.86[EUR][1000 genomes]
rs513188	0.86[EUR][1000 genomes]
rs513994	0.83[EUR][1000 genomes]
rs515307	0.83[EUR][1000 genomes]
rs516312	0.83[EUR][1000 genomes]
rs517698	0.86[EUR][1000 genomes]
rs520879	0.86[EUR][1000 genomes]
rs527836	0.82[EUR][1000 genomes]
rs530566	0.86[EUR][1000 genomes]
rs535881	0.83[EUR][1000 genomes]
rs536561	0.86[EUR][1000 genomes]
rs538834	0.83[EUR][1000 genomes]
rs545322	0.86[EUR][1000 genomes]
rs546090	0.86[EUR][1000 genomes]
rs550241	0.85[EUR][1000 genomes]
rs554215	0.86[EUR][1000 genomes]
rs55633838	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs559042	0.86[EUR][1000 genomes]
rs559400	0.82[EUR][1000 genomes]
rs563909	0.86[EUR][1000 genomes]
rs567983	0.82[EUR][1000 genomes]
rs569339	0.86[EUR][1000 genomes]
rs570318	0.86[EUR][1000 genomes]
rs571883	0.86[EUR][1000 genomes]
rs573908	0.86[EUR][1000 genomes]
rs575317	0.86[EUR][1000 genomes]
rs62280731	0.84[ASN][1000 genomes]
rs62280733	0.92[ASN][1000 genomes]
rs62280735	0.92[ASN][1000 genomes]
rs62280737	0.95[ASN][1000 genomes]
rs62280745	1.00[ASN][1000 genomes]
rs62280747	1.00[ASN][1000 genomes]
rs6777720	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7622461	0.92[ASN][1000 genomes]
rs9790303	0.97[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101239000-101244600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:101239200-101252000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:101240400-101243400	Weak transcription	K562	blood
4	chr3:101240600-101251000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:101241800-101247600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:101242200-101247400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:101242200-101248000	Weak transcription	Primary T cells from cord blood	blood

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