Variant report

Variant	rs7622461
Chromosome Location	chr3:101185648-101185649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10451923	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10511189	0.83[EUR][1000 genomes]
rs11919906	0.92[ASN][1000 genomes]
rs13078121	0.81[AMR][1000 genomes]
rs1520654	0.83[EUR][1000 genomes]
rs16843627	0.83[EUR][1000 genomes]
rs16843634	0.84[EUR][1000 genomes]
rs16843699	0.84[EUR][1000 genomes]
rs16843817	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2271972	0.83[EUR][1000 genomes]
rs34774691	0.81[AMR][1000 genomes]
rs35902489	0.83[EUR][1000 genomes]
rs3732893	0.83[EUR][1000 genomes]
rs3773915	0.84[EUR][1000 genomes]
rs3773917	0.84[EUR][1000 genomes]
rs3773918	0.84[EUR][1000 genomes]
rs4260407	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4553955	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62280637	0.81[EUR][1000 genomes]
rs62280663	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62280664	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62280665	0.94[EUR][1000 genomes]
rs62280669	0.92[EUR][1000 genomes]
rs62280670	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62280671	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62280673	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62280674	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62280675	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62280719	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62280720	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62280721	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62280722	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62280725	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62280726	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62280728	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62280731	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62280733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280735	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280745	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62280746	0.92[ASN][1000 genomes]
rs62280747	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62282871	0.83[EUR][1000 genomes]
rs62282873	0.83[EUR][1000 genomes]
rs62282875	0.83[EUR][1000 genomes]
rs62282885	0.84[EUR][1000 genomes]
rs62282886	0.84[EUR][1000 genomes]
rs62282887	0.84[EUR][1000 genomes]
rs62282888	0.84[EUR][1000 genomes]
rs62282889	0.84[EUR][1000 genomes]
rs62282890	0.90[EUR][1000 genomes]
rs62282892	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6441595	0.84[EUR][1000 genomes]
rs72487765	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72932462	0.83[EUR][1000 genomes]
rs7611378	0.84[EUR][1000 genomes]
rs7621506	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7632064	0.83[EUR][1000 genomes]
rs7634592	0.83[EUR][1000 genomes]
rs9790303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101160200-101210800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:101161400-101196800	Weak transcription	Thymus	Thymus
3	chr3:101161400-101207600	Weak transcription	Aorta	Aorta
4	chr3:101171200-101230400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:101171400-101193400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:101171400-101207800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:101174000-101202000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:101174600-101211000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:101176000-101211200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:101176600-101211600	Weak transcription	HSMM	muscle
11	chr3:101176800-101193400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:101176800-101203200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:101176800-101211200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:101176800-101211400	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:101177600-101191600	Weak transcription	Primary B cells from cord blood	blood
16	chr3:101177600-101194200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:101177600-101210800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:101177800-101193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:101177800-101194200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:101177800-101202000	Weak transcription	Dnd41	blood
21	chr3:101177800-101202800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:101178000-101192200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr3:101178200-101193400	Weak transcription	Fetal Lung	lung
24	chr3:101178200-101207000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr3:101181000-101193400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:101183800-101186400	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr3:101184000-101186400	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr3:101184200-101185800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:101184200-101185800	Weak transcription	Psoas Muscle	Psoas
30	chr3:101184200-101197000	Weak transcription	Small Intestine	intestine
31	chr3:101184400-101191600	Weak transcription	Fetal Brain Male	brain
32	chr3:101184400-101203200	Weak transcription	Ovary	ovary
33	chr3:101185000-101186800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr3:101185000-101187000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:101185200-101185800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr3:101185200-101186000	Enhancers	Fetal Heart	heart
37	chr3:101185200-101186000	Active TSS	A549	lung
38	chr3:101185200-101186200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:101185200-101186200	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr3:101185400-101185800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr3:101185400-101185800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr3:101185400-101185800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
43	chr3:101185400-101186000	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr3:101185400-101186000	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr3:101185400-101186000	Flanking Active TSS	K562	blood
46	chr3:101185400-101186200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr3:101185400-101186200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:101185400-101186200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:101185400-101186200	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr3:101185400-101186200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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