Variant report

Variant	rs13078121
Chromosome Location	chr3:101275275-101275276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101273701..101278285-chr3:101278645..101282162,6	K562	blood:
2	chr3:101273531..101276601-chr3:101279103..101282496,5	MCF-7	breast:
3	chr3:101274159..101275966-chr3:101283284..101284930,2	K562	blood:
4	chr3:101273703..101276448-chr3:101288119..101291518,3	K562	blood:

Variant related genes	Relation type
ENSG00000174173	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1078154	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12629395	0.87[EUR][1000 genomes]
rs12631729	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12636505	0.81[ASN][1000 genomes]
rs13062695	0.92[EUR][1000 genomes]
rs13063994	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13065665	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13070567	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097625	0.82[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097712	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13347262	0.88[CHB][hapmap]
rs16843817	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs16844078	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1976944	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.97[ASN][1000 genomes]
rs34408425	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34774691	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34930373	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35917542	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3762735	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4260407	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4553955	0.88[CHB][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs55633838	0.81[ASN][1000 genomes]
rs62280733	0.81[AMR][1000 genomes]
rs62280735	0.81[AMR][1000 genomes]
rs62280737	0.81[AMR][1000 genomes]
rs62280745	0.81[AMR][1000 genomes]
rs62280747	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6441619	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs6762367	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792847	1.00[CEU][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs71315243	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71315244	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71315245	0.87[EUR][1000 genomes]
rs71315246	0.88[EUR][1000 genomes]
rs72487765	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7619122	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7622461	0.81[AMR][1000 genomes]
rs7630598	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7632449	0.88[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs7637805	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9790303	0.81[AMR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13078121	C3orf26	cis	cerebellum	SCAN
rs13078121	CBLB	cis	cerebellum	SCAN
rs13078121	ZBTB11	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101268400-101275400	Weak transcription	K562	blood
2	chr3:101273000-101277600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:101274600-101275800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:101274600-101275800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:101274600-101276000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:101274600-101280400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:101274800-101275800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:101275200-101275600	Enhancers	HUES64 Cell Line	embryonic stem cell

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