Variant report

Variant	rs13065665
Chromosome Location	chr3:101286486-101286487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101232924..101235837-chr3:101285260..101286836,2	K562	blood:
2	chr3:101232266..101234424-chr3:101285260..101287945,2	K562	blood:
3	chr3:101284750..101287120-chr3:101404021..101405539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114391	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1078154	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629395	0.87[EUR][1000 genomes]
rs12631729	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062695	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13063994	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13070567	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078121	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097625	0.81[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.93[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097712	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13347262	0.88[CHB][hapmap]
rs16843817	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs16844078	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976944	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs34408425	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34774691	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34930373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35917542	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4260407	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4553955	0.88[CHB][hapmap];0.85[MEX][hapmap];0.80[TSI][hapmap]
rs62280747	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6441619	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs6762367	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792847	1.00[CEU][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs71315243	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71315244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315245	0.87[EUR][1000 genomes]
rs71315246	0.88[EUR][1000 genomes]
rs72487765	0.81[AMR][1000 genomes]
rs7619122	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630598	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7632449	0.88[LWK][hapmap];0.84[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs7637805	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13065665	C3orf26	cis	cerebellum	SCAN
rs13065665	CBLB	cis	cerebellum	SCAN
rs13065665	ZBTB11	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101281400-101292600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:101281800-101292000	Weak transcription	Colonic Mucosa	Colon
3	chr3:101281800-101292200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:101281800-101292200	Weak transcription	Esophagus	oesophagus
5	chr3:101281800-101292200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:101282000-101291800	Weak transcription	Brain Substantia Nigra	brain
7	chr3:101282000-101291800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:101282000-101292200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:101282000-101292200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:101282000-101292200	Weak transcription	Right Atrium	heart
11	chr3:101282200-101291600	Weak transcription	Fetal Lung	lung
12	chr3:101282200-101292200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:101282200-101292600	Weak transcription	Aorta	Aorta
14	chr3:101282400-101286600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:101282400-101287400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:101282400-101289800	Weak transcription	Psoas Muscle	Psoas
17	chr3:101282400-101291800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:101282400-101292000	Weak transcription	Right Ventricle	heart
19	chr3:101282400-101292200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:101282400-101292400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:101282400-101292600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:101282400-101292600	Weak transcription	Spleen	Spleen
23	chr3:101282600-101286600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:101282600-101292000	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:101282600-101292200	Weak transcription	Small Intestine	intestine
26	chr3:101282800-101286600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr3:101282800-101287200	Strong transcription	Fetal Thymus	thymus
28	chr3:101282800-101289600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:101282800-101291400	Weak transcription	Fetal Heart	heart
30	chr3:101283000-101286600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:101283000-101286800	Strong transcription	Dnd41	blood
32	chr3:101283000-101292600	Weak transcription	Gastric	stomach
33	chr3:101283200-101286600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr3:101283400-101286600	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr3:101283400-101286600	Strong transcription	Primary hematopoietic stem cells	blood
36	chr3:101283400-101287600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:101283600-101286600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:101283600-101286600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:101283600-101286600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr3:101283600-101286600	Strong transcription	Adipose Nuclei	Adipose
41	chr3:101283600-101287000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr3:101283600-101287200	Strong transcription	Primary T cells from cord blood	blood
43	chr3:101283600-101287400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr3:101283600-101287600	Strong transcription	HSMM	muscle
45	chr3:101283800-101286600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr3:101283800-101286600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:101283800-101286600	Strong transcription	Fetal Muscle Leg	muscle
48	chr3:101283800-101286800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:101283800-101286800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:101283800-101287400	Strong transcription	Muscle Satellite Cultured Cells	--

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