Variant report

Variant	rs71315245
Chromosome Location	chr3:101349499-101349500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:101349451-101349586	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101303692..101306501-chr3:101349229..101351407,2	K562	blood:
2	chr3:101290744..101293723-chr3:101348752..101353109,4	K562	blood:

Variant related genes	Relation type
ENSG00000212319	TF binding region
ENSG00000081154	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1078154	0.85[EUR][1000 genomes]
rs12629395	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631729	0.87[EUR][1000 genomes]
rs13062695	0.89[EUR][1000 genomes]
rs13063994	0.90[EUR][1000 genomes]
rs13065665	0.87[EUR][1000 genomes]
rs13070567	0.90[EUR][1000 genomes]
rs13078121	0.87[EUR][1000 genomes]
rs13097625	0.90[EUR][1000 genomes]
rs13097712	0.84[EUR][1000 genomes]
rs16844078	0.88[EUR][1000 genomes]
rs16844120	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34103639	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34408425	0.92[EUR][1000 genomes]
rs34508490	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34774691	0.87[EUR][1000 genomes]
rs34930373	0.87[EUR][1000 genomes]
rs35102530	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35917542	0.88[EUR][1000 genomes]
rs3762735	0.87[EUR][1000 genomes]
rs6441619	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762367	0.87[EUR][1000 genomes]
rs6791241	0.85[ASN][1000 genomes]
rs6792847	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71315243	0.87[EUR][1000 genomes]
rs71315244	0.87[EUR][1000 genomes]
rs71315246	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315249	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7619122	0.92[EUR][1000 genomes]
rs7630598	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632449	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7637805	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv992869	chr3:101348433-101360316	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101348400-101350000	Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links