Variant report

Variant	rs71315243
Chromosome Location	chr3:101283050-101283051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101277954..101280498-chr3:101281065..101283887,2	MCF-7	breast:
2	chr3:101230728..101233883-chr3:101278974..101284573,9	K562	blood:

Variant related genes	Relation type
ENSG00000138468	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1078154	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12629395	0.87[EUR][1000 genomes]
rs12631729	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13062695	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13063994	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13065665	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13070567	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13078121	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13097625	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13097712	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16844078	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34408425	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34774691	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34930373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35917542	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3762735	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4260407	0.81[AMR][1000 genomes]
rs62280745	0.83[AFR][1000 genomes]
rs62280747	0.81[AMR][1000 genomes]
rs6441619	0.88[EUR][1000 genomes]
rs6762367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6792847	0.88[EUR][1000 genomes]
rs71315244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71315245	0.87[EUR][1000 genomes]
rs71315246	0.88[EUR][1000 genomes]
rs72487765	0.81[AMR][1000 genomes]
rs7619122	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7630598	0.88[EUR][1000 genomes]
rs7637805	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101281400-101292600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:101281800-101292000	Weak transcription	Colonic Mucosa	Colon
3	chr3:101281800-101292200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:101281800-101292200	Weak transcription	Esophagus	oesophagus
5	chr3:101281800-101292200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:101282000-101283800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:101282000-101283800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:101282000-101284000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:101282000-101284200	Weak transcription	Brain Anterior Caudate	brain
10	chr3:101282000-101284200	Weak transcription	Fetal Stomach	stomach
11	chr3:101282000-101284400	Weak transcription	Brain Angular Gyrus	brain
12	chr3:101282000-101284400	Weak transcription	Fetal Kidney	kidney
13	chr3:101282000-101284600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr3:101282000-101284600	Weak transcription	HSMMtube	muscle
15	chr3:101282000-101285000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:101282000-101285200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:101282000-101291800	Weak transcription	Brain Substantia Nigra	brain
18	chr3:101282000-101291800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:101282000-101292200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:101282000-101292200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:101282000-101292200	Weak transcription	Right Atrium	heart
22	chr3:101282200-101283200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:101282200-101283400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:101282200-101283600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:101282200-101283600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:101282200-101283600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr3:101282200-101283600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:101282200-101283600	Weak transcription	Placenta	Placenta
29	chr3:101282200-101283800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:101282200-101283800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr3:101282200-101283800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:101282200-101283800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr3:101282200-101283800	Weak transcription	NHLF	lung
34	chr3:101282200-101284000	Weak transcription	Fetal Intestine Large	intestine
35	chr3:101282200-101285000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr3:101282200-101291600	Weak transcription	Fetal Lung	lung
37	chr3:101282200-101292200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr3:101282200-101292600	Weak transcription	Aorta	Aorta
39	chr3:101282400-101283400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:101282400-101283400	Weak transcription	Primary B cells from cord blood	blood
41	chr3:101282400-101283600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:101282400-101283600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:101282400-101283600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr3:101282400-101283600	Weak transcription	Adipose Nuclei	Adipose
45	chr3:101282400-101283600	Weak transcription	Ovary	ovary
46	chr3:101282400-101283600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr3:101282400-101283600	Weak transcription	HSMM	muscle
48	chr3:101282400-101283600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr3:101282400-101283800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr3:101282400-101283800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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