Variant report

Variant	rs13097712
Chromosome Location	chr3:101314123-101314124
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101306837..101309354-chr3:101312935..101314990,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081154	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1078154	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629395	0.84[EUR][1000 genomes]
rs12631729	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062695	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13063994	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13065665	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070567	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078121	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097625	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844078	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976944	1.00[ASN][1000 genomes]
rs34408425	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34774691	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34930373	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35917542	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762735	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441619	0.86[EUR][1000 genomes]
rs6762367	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792847	0.86[EUR][1000 genomes]
rs71315243	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71315244	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315245	0.84[EUR][1000 genomes]
rs71315246	0.86[EUR][1000 genomes]
rs7619122	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630598	0.86[EUR][1000 genomes]
rs7637805	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:101295800-101315000	Weak transcription	Right Atrium	heart
3	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
4	chr3:101296400-101316400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:101296600-101315000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:101296800-101318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:101297400-101314400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:101297600-101315200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:101298600-101316400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:101300200-101317800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:101301000-101315400	Strong transcription	Dnd41	blood
12	chr3:101301200-101315400	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:101301400-101316400	Strong transcription	Primary B cells from peripheral blood	blood
14	chr3:101301600-101314600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr3:101301600-101315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:101301600-101317000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:101301800-101316000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:101302200-101314400	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr3:101302600-101319600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:101302800-101315000	Strong transcription	Fetal Thymus	thymus
21	chr3:101303200-101314600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:101303200-101315000	Strong transcription	Liver	Liver
23	chr3:101303400-101316800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:101303600-101315000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:101303600-101315200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:101303600-101316400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr3:101303800-101315200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:101303800-101316800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:101304200-101319600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr3:101304800-101315000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr3:101304800-101317000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:101305600-101314200	Weak transcription	Lung	lung
33	chr3:101305800-101318200	Weak transcription	Spleen	Spleen
34	chr3:101305800-101319800	Weak transcription	Pancreas	Pancrea
35	chr3:101305800-101322600	Weak transcription	HSMMtube	muscle
36	chr3:101305800-101324400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:101306000-101318200	Weak transcription	Gastric	stomach
38	chr3:101306400-101316000	Weak transcription	Brain Substantia Nigra	brain
39	chr3:101306800-101314200	Weak transcription	Fetal Brain Male	brain
40	chr3:101306800-101314600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr3:101306800-101317600	Weak transcription	Fetal Kidney	kidney
42	chr3:101307400-101318000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:101307800-101314400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr3:101308400-101315200	Strong transcription	NH-A	brain
45	chr3:101308600-101314600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr3:101309200-101316400	Weak transcription	Hela-S3	cervix
47	chr3:101309600-101314800	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:101309600-101316400	Weak transcription	Colonic Mucosa	Colon
49	chr3:101309600-101317200	Weak transcription	HepG2	liver
50	chr3:101309600-101320200	Weak transcription	Brain Inferior Temporal Lobe	brain

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