Variant report

Variant	rs1976944
Chromosome Location	chr3:101285420-101285421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101247933..101249569-chr3:101284199..101286459,2	K562	blood:
2	chr3:101232924..101235837-chr3:101285260..101286836,2	K562	blood:
3	chr3:101232266..101234424-chr3:101285260..101287945,2	K562	blood:
4	chr3:101284750..101287120-chr3:101404021..101405539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114391	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1078154	0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs11918335	0.80[AMR][1000 genomes]
rs12631729	1.00[ASN][1000 genomes]
rs12636505	0.82[AMR][1000 genomes]
rs13063994	0.83[ASN][1000 genomes]
rs13065665	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs13070567	1.00[ASN][1000 genomes]
rs13078121	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.97[ASN][1000 genomes]
rs13097625	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.80[MEX][hapmap];1.00[ASN][1000 genomes]
rs13097712	1.00[ASN][1000 genomes]
rs13347262	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs1405781	0.82[AMR][1000 genomes]
rs16843817	0.88[CHB][hapmap]
rs16844078	1.00[ASN][1000 genomes]
rs1880982	0.87[CEU][hapmap]
rs34408425	0.97[ASN][1000 genomes]
rs34774691	0.86[ASN][1000 genomes]
rs34930373	1.00[ASN][1000 genomes]
rs35917542	1.00[ASN][1000 genomes]
rs3762735	1.00[ASN][1000 genomes]
rs4553955	0.88[CHB][hapmap]
rs55633838	0.82[AMR][1000 genomes]
rs6762367	0.97[ASN][1000 genomes]
rs6777720	0.82[AMR][1000 genomes]
rs71315244	1.00[ASN][1000 genomes]
rs7619122	0.97[ASN][1000 genomes]
rs7637805	1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101281400-101292600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:101281800-101292000	Weak transcription	Colonic Mucosa	Colon
3	chr3:101281800-101292200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:101281800-101292200	Weak transcription	Esophagus	oesophagus
5	chr3:101281800-101292200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:101282000-101291800	Weak transcription	Brain Substantia Nigra	brain
7	chr3:101282000-101291800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:101282000-101292200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:101282000-101292200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:101282000-101292200	Weak transcription	Right Atrium	heart
11	chr3:101282200-101291600	Weak transcription	Fetal Lung	lung
12	chr3:101282200-101292200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:101282200-101292600	Weak transcription	Aorta	Aorta
14	chr3:101282400-101286400	Strong transcription	A549	lung
15	chr3:101282400-101286600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:101282400-101287400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:101282400-101289800	Weak transcription	Psoas Muscle	Psoas
18	chr3:101282400-101291800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:101282400-101292000	Weak transcription	Right Ventricle	heart
20	chr3:101282400-101292200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:101282400-101292400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:101282400-101292600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:101282400-101292600	Weak transcription	Spleen	Spleen
24	chr3:101282600-101286600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:101282600-101292000	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:101282600-101292200	Weak transcription	Small Intestine	intestine
27	chr3:101282800-101285600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:101282800-101285600	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr3:101282800-101286600	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr3:101282800-101287200	Strong transcription	Fetal Thymus	thymus
31	chr3:101282800-101289600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:101282800-101291400	Weak transcription	Fetal Heart	heart
33	chr3:101283000-101286400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr3:101283000-101286400	Strong transcription	NHEK	skin
35	chr3:101283000-101286600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:101283000-101286800	Strong transcription	Dnd41	blood
37	chr3:101283000-101292600	Weak transcription	Gastric	stomach
38	chr3:101283200-101286400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:101283200-101286400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr3:101283200-101286600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:101283400-101285600	Strong transcription	Liver	Liver
42	chr3:101283400-101286600	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr3:101283400-101286600	Strong transcription	Primary hematopoietic stem cells	blood
44	chr3:101283400-101287600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:101283600-101285600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:101283600-101285600	Strong transcription	Placenta	Placenta
47	chr3:101283600-101285600	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr3:101283600-101285800	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr3:101283600-101285800	Strong transcription	HUVEC	blood vessel
50	chr3:101283600-101286000	Strong transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links