Variant report

Variant	rs7637805
Chromosome Location	chr3:101309593-101309594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101303155..101306104-chr3:101309279..101311204,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1078154	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11556582	0.80[AMR][1000 genomes]
rs12629395	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12631729	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062695	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13063994	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13065665	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078121	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097712	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844078	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844120	0.80[AFR][1000 genomes]
rs1976944	1.00[ASN][1000 genomes]
rs34103639	0.82[AFR][1000 genomes]
rs34408425	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34508490	0.82[AFR][1000 genomes]
rs34774691	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34930373	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35917542	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762735	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56899303	0.82[AMR][1000 genomes]
rs6441619	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6762367	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792847	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs71315243	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71315244	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315245	0.90[EUR][1000 genomes]
rs71315246	0.92[EUR][1000 genomes]
rs71315249	0.82[AFR][1000 genomes]
rs7619122	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630598	0.92[EUR][1000 genomes]
rs7632449	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522745	chr3:101306507-101313940	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv528547	chr3:101306507-101313940	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101294000-101312200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:101294200-101310000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:101295000-101310200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:101295800-101315000	Weak transcription	Right Atrium	heart
6	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
7	chr3:101296200-101310000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:101296400-101316400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:101296600-101311600	Weak transcription	Stomach Mucosa	stomach
10	chr3:101296600-101315000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:101296800-101318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:101297400-101314400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:101297600-101315200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:101297800-101312400	Weak transcription	Brain Angular Gyrus	brain
15	chr3:101298600-101316400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:101298800-101312000	Weak transcription	Fetal Heart	heart
17	chr3:101298800-101312800	Weak transcription	Small Intestine	intestine
18	chr3:101300200-101317800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:101301000-101311400	Strong transcription	Fetal Stomach	stomach
20	chr3:101301000-101313400	Strong transcription	HSMM	muscle
21	chr3:101301000-101315400	Strong transcription	Dnd41	blood
22	chr3:101301200-101313000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:101301200-101315400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:101301400-101313600	Strong transcription	Primary B cells from cord blood	blood
25	chr3:101301400-101316400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr3:101301600-101309800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:101301600-101314600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr3:101301600-101315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:101301600-101317000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:101301800-101311400	Strong transcription	Fetal Muscle Leg	muscle
31	chr3:101301800-101312200	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr3:101301800-101313400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:101301800-101316000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr3:101302000-101310000	Weak transcription	NHDF-Ad	bronchial
35	chr3:101302200-101314400	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr3:101302600-101319600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr3:101302800-101313600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr3:101302800-101315000	Strong transcription	Fetal Thymus	thymus
39	chr3:101303200-101314600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:101303200-101315000	Strong transcription	Liver	Liver
41	chr3:101303400-101311000	Strong transcription	GM12878-XiMat	blood
42	chr3:101303400-101316800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:101303600-101309600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:101303600-101313400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:101303600-101315000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr3:101303600-101315200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr3:101303600-101316400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr3:101303800-101310400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr3:101303800-101313400	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr3:101303800-101313400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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