Variant report

Variant	rs11556582
Chromosome Location	chr3:101312800-101312801
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101310187..101312931-chr3:101315424..101317522,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1078154	0.80[AMR][1000 genomes]
rs13070567	0.80[AMR][1000 genomes]
rs13097625	0.80[AMR][1000 genomes]
rs16844078	0.80[AMR][1000 genomes]
rs35917542	0.80[AMR][1000 genomes]
rs7637805	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522745	chr3:101306507-101313940	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv528547	chr3:101306507-101313940	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv963346	chr3:101310216-101313034	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:101295800-101315000	Weak transcription	Right Atrium	heart
3	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
4	chr3:101296400-101316400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:101296600-101315000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:101296800-101318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:101297400-101314400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:101297600-101315200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:101298600-101316400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:101298800-101312800	Weak transcription	Small Intestine	intestine
11	chr3:101300200-101317800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:101301000-101313400	Strong transcription	HSMM	muscle
13	chr3:101301000-101315400	Strong transcription	Dnd41	blood
14	chr3:101301200-101313000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:101301200-101315400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:101301400-101313600	Strong transcription	Primary B cells from cord blood	blood
17	chr3:101301400-101316400	Strong transcription	Primary B cells from peripheral blood	blood
18	chr3:101301600-101314600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr3:101301600-101315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:101301600-101317000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:101301800-101313400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:101301800-101316000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:101302200-101314400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr3:101302600-101319600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:101302800-101313600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr3:101302800-101315000	Strong transcription	Fetal Thymus	thymus
27	chr3:101303200-101314600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:101303200-101315000	Strong transcription	Liver	Liver
29	chr3:101303400-101316800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:101303600-101313400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:101303600-101315000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr3:101303600-101315200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:101303600-101316400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr3:101303800-101313400	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr3:101303800-101313400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:101303800-101315200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:101303800-101316800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:101304000-101313200	Strong transcription	Placenta	Placenta
39	chr3:101304200-101319600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr3:101304600-101312800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:101304800-101315000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr3:101304800-101317000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:101305600-101314200	Weak transcription	Lung	lung
44	chr3:101305800-101318200	Weak transcription	Spleen	Spleen
45	chr3:101305800-101319800	Weak transcription	Pancreas	Pancrea
46	chr3:101305800-101322600	Weak transcription	HSMMtube	muscle
47	chr3:101305800-101324400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:101306000-101318200	Weak transcription	Gastric	stomach
49	chr3:101306400-101316000	Weak transcription	Brain Substantia Nigra	brain
50	chr3:101306800-101314200	Weak transcription	Fetal Brain Male	brain

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