Variant report

Variant	rs13070567
Chromosome Location	chr3:101306489-101306490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:101306254-101306824	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:101303692..101306501-chr3:101349229..101351407,2	K562	blood:
2	chr3:101294135..101296037-chr3:101305299..101307442,2	K562	blood:
3	chr3:101292711..101295635-chr3:101305942..101308105,2	K562	blood:

Variant related genes	Relation type
PCNP	TF binding region
ENSG00000242299	Chromatin interaction
ENSG00000081154	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1078154	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11556582	0.80[AMR][1000 genomes]
rs12629395	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12631729	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062695	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13063994	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13065665	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078121	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097712	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844078	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976944	1.00[ASN][1000 genomes]
rs34408425	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34774691	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34930373	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35917542	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762735	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56899303	0.82[AMR][1000 genomes]
rs6441619	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6762367	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792847	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs71315243	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71315244	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315245	0.90[EUR][1000 genomes]
rs71315246	0.92[EUR][1000 genomes]
rs7619122	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630598	0.92[EUR][1000 genomes]
rs7637805	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101294000-101312200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:101294200-101309000	Weak transcription	Colonic Mucosa	Colon
3	chr3:101294200-101310000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:101294400-101309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:101295000-101309400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:101295000-101310200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:101295200-101306800	Weak transcription	Psoas Muscle	Psoas
9	chr3:101295800-101315000	Weak transcription	Right Atrium	heart
10	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
11	chr3:101296200-101310000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:101296400-101316400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:101296600-101311600	Weak transcription	Stomach Mucosa	stomach
14	chr3:101296600-101315000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:101296800-101318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:101297400-101314400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:101297600-101315200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:101297800-101312400	Weak transcription	Brain Angular Gyrus	brain
19	chr3:101298600-101316400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:101298800-101312000	Weak transcription	Fetal Heart	heart
21	chr3:101298800-101312800	Weak transcription	Small Intestine	intestine
22	chr3:101299000-101309400	Weak transcription	Ovary	ovary
23	chr3:101300200-101317800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:101301000-101311400	Strong transcription	Fetal Stomach	stomach
25	chr3:101301000-101313400	Strong transcription	HSMM	muscle
26	chr3:101301000-101315400	Strong transcription	Dnd41	blood
27	chr3:101301200-101307200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:101301200-101313000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:101301200-101315400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr3:101301400-101313600	Strong transcription	Primary B cells from cord blood	blood
31	chr3:101301400-101316400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr3:101301600-101307200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr3:101301600-101307200	Strong transcription	Fetal Intestine Large	intestine
34	chr3:101301600-101309800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:101301600-101314600	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr3:101301600-101315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:101301600-101317000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:101301800-101307200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:101301800-101307600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr3:101301800-101311400	Strong transcription	Fetal Muscle Leg	muscle
41	chr3:101301800-101312200	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr3:101301800-101313400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:101301800-101316000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:101302000-101310000	Weak transcription	NHDF-Ad	bronchial
45	chr3:101302200-101314400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr3:101302600-101319600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr3:101302800-101307200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr3:101302800-101313600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:101302800-101315000	Strong transcription	Fetal Thymus	thymus
50	chr3:101303000-101307200	Strong transcription	Fetal Brain Female	brain

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