Variant report

Variant	rs3762735
Chromosome Location	chr3:101283792-101283793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101277954..101280498-chr3:101281065..101283887,2	MCF-7	breast:
2	chr3:101230728..101233883-chr3:101278974..101284573,9	K562	blood:
3	chr3:101274159..101275966-chr3:101283284..101284930,2	K562	blood:

Variant related genes	Relation type
ENSG00000138468	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1078154	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629395	0.87[EUR][1000 genomes]
rs12631729	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062695	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13063994	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13065665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070567	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078121	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097625	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097712	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844078	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976944	1.00[ASN][1000 genomes]
rs34408425	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34774691	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34930373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35917542	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4260407	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62280747	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6441619	0.88[EUR][1000 genomes]
rs6762367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792847	0.88[EUR][1000 genomes]
rs71315243	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71315244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315245	0.87[EUR][1000 genomes]
rs71315246	0.88[EUR][1000 genomes]
rs72487765	0.81[AMR][1000 genomes]
rs7619122	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630598	0.88[EUR][1000 genomes]
rs7637805	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101281400-101292600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:101281800-101292000	Weak transcription	Colonic Mucosa	Colon
3	chr3:101281800-101292200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:101281800-101292200	Weak transcription	Esophagus	oesophagus
5	chr3:101281800-101292200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:101282000-101283800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:101282000-101283800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:101282000-101284000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:101282000-101284200	Weak transcription	Brain Anterior Caudate	brain
10	chr3:101282000-101284200	Weak transcription	Fetal Stomach	stomach
11	chr3:101282000-101284400	Weak transcription	Brain Angular Gyrus	brain
12	chr3:101282000-101284400	Weak transcription	Fetal Kidney	kidney
13	chr3:101282000-101284600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr3:101282000-101284600	Weak transcription	HSMMtube	muscle
15	chr3:101282000-101285000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:101282000-101285200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:101282000-101291800	Weak transcription	Brain Substantia Nigra	brain
18	chr3:101282000-101291800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:101282000-101292200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:101282000-101292200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:101282000-101292200	Weak transcription	Right Atrium	heart
22	chr3:101282200-101283800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:101282200-101283800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:101282200-101283800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:101282200-101283800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:101282200-101283800	Weak transcription	NHLF	lung
27	chr3:101282200-101284000	Weak transcription	Fetal Intestine Large	intestine
28	chr3:101282200-101285000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:101282200-101291600	Weak transcription	Fetal Lung	lung
30	chr3:101282200-101292200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr3:101282200-101292600	Weak transcription	Aorta	Aorta
32	chr3:101282400-101283800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr3:101282400-101283800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:101282400-101283800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr3:101282400-101283800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:101282400-101283800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr3:101282400-101283800	Weak transcription	Fetal Muscle Leg	muscle
38	chr3:101282400-101283800	Weak transcription	Lung	lung
39	chr3:101282400-101283800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:101282400-101283800	Weak transcription	NHDF-Ad	bronchial
41	chr3:101282400-101284200	Weak transcription	Left Ventricle	heart
42	chr3:101282400-101284200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:101282400-101284400	Weak transcription	Brain Germinal Matrix	brain
44	chr3:101282400-101284400	Weak transcription	Fetal Brain Male	brain
45	chr3:101282400-101286400	Strong transcription	A549	lung
46	chr3:101282400-101286600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:101282400-101287400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:101282400-101289800	Weak transcription	Psoas Muscle	Psoas
49	chr3:101282400-101291800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr3:101282400-101292000	Weak transcription	Right Ventricle	heart

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