Variant report

Variant	rs6441619
Chromosome Location	chr3:101343804-101343805
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101291482..101293245-chr3:101342299..101345012,2	K562	blood:
2	chr3:101343521..101346428-chr3:101395311..101397693,2	K562	blood:
3	chr3:101291174..101294034-chr3:101342312..101345012,3	K562	blood:

Variant related genes	Relation type
ENSG00000081154	Chromatin interaction
ENSG00000066422	Chromatin interaction
ENSG00000256628	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1078154	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12629395	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631729	0.88[EUR][1000 genomes]
rs13062695	0.91[EUR][1000 genomes]
rs13063994	0.91[EUR][1000 genomes]
rs13065665	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs13070567	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13078121	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs13097625	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs13097712	0.86[EUR][1000 genomes]
rs16844078	0.89[EUR][1000 genomes]
rs16844120	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34103639	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34408425	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34508490	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34774691	0.88[EUR][1000 genomes]
rs34930373	0.88[EUR][1000 genomes]
rs35102530	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35917542	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3762735	0.88[EUR][1000 genomes]
rs6762367	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs6791241	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6792847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71315243	0.88[EUR][1000 genomes]
rs71315244	0.88[EUR][1000 genomes]
rs71315245	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315246	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315249	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7619122	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7630598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632449	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7637805	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101342600-101344000	Strong transcription	K562	blood
2	chr3:101343600-101344000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:101343800-101344200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr3:101343800-101344400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr3:101343800-101345200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr3:101343800-101345200	Enhancers	H1 Cell Line	embryonic stem cell

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