Variant report

Variant	rs6791241
Chromosome Location	chr3:101410920-101410921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101394514..101397777-chr3:101409248..101412571,4	K562	blood:
2	chr3:101394133..101397139-chr3:101409429..101412094,3	K562	blood:

Variant related genes	Relation type
ENSG00000066422	Chromatin interaction
ENSG00000256628	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12629395	0.85[ASN][1000 genomes]
rs16844120	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34103639	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34508490	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35102530	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs610988	0.83[EUR][1000 genomes]
rs6441619	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6792847	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71315245	0.85[ASN][1000 genomes]
rs71315246	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71315249	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7630598	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7632449	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101406000-101411600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:101406400-101414400	Weak transcription	Brain Substantia Nigra	brain
3	chr3:101406400-101422200	Weak transcription	Ovary	ovary
4	chr3:101406600-101414600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr3:101406600-101426400	Weak transcription	Fetal Intestine Small	intestine
6	chr3:101406800-101413800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:101406800-101414200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:101406800-101414200	Weak transcription	Fetal Kidney	kidney
9	chr3:101406800-101414400	Weak transcription	Brain Anterior Caudate	brain
10	chr3:101406800-101414400	Weak transcription	Fetal Brain Female	brain
11	chr3:101406800-101414600	Weak transcription	Brain Angular Gyrus	brain
12	chr3:101406800-101419200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:101407000-101413400	Weak transcription	Right Atrium	heart
14	chr3:101407000-101422600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:101410200-101414600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:101410200-101414600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:101410200-101420600	Weak transcription	Lung	lung
18	chr3:101410600-101411200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr3:101410600-101411200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:101410600-101411600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:101410600-101412200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:101410600-101413000	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr3:101410800-101411600	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr3:101410800-101411800	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr3:101410800-101412600	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr3:101410800-101414600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:101410800-101415000	Active TSS	iPS-15b Cell Line	embryonic stem cell

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