Variant report

Variant	rs35102530
Chromosome Location	chr3:101392041-101392042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101388186..101389836-chr3:101391402..101393014,2	K562	blood:
2	chr3:101390217..101392058-chr3:101398423..101400158,2	MCF-7	breast:
3	chr3:101289369..101294999-chr3:101391357..101396813,8	K562	blood:
4	chr3:101391957..101394072-chr3:101395408..101397212,3	MCF-7	breast:
5	chr3:101292143..101294158-chr3:101391089..101392992,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066422	Chromatin interaction
ENSG00000081154	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12629395	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16844120	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34103639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34508490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs610988	0.85[EUR][1000 genomes]
rs6441619	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6791241	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6792847	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71315245	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71315246	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71315249	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630598	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7632449	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101363000-101394400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:101363200-101394400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:101366400-101392200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr3:101371000-101394800	Weak transcription	Small Intestine	intestine
5	chr3:101373200-101393800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:101373200-101394000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:101374200-101394600	Weak transcription	Esophagus	oesophagus
8	chr3:101380600-101393000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:101382600-101392800	Weak transcription	Gastric	stomach
10	chr3:101382600-101393800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:101383000-101395000	Weak transcription	Spleen	Spleen
12	chr3:101383400-101394000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:101383400-101394200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:101383600-101394800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:101384400-101393800	Weak transcription	Fetal Heart	heart
16	chr3:101384400-101393800	Weak transcription	Right Ventricle	heart
17	chr3:101384400-101394000	Weak transcription	Brain Germinal Matrix	brain
18	chr3:101384600-101394000	Weak transcription	Brain Substantia Nigra	brain
19	chr3:101384600-101394000	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:101384600-101394400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:101384600-101394400	Weak transcription	HSMMtube	muscle
22	chr3:101384800-101394400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:101385000-101394400	Weak transcription	Lung	lung
24	chr3:101385400-101393800	Weak transcription	NHLF	lung
25	chr3:101386200-101393000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:101386200-101393000	Weak transcription	Pancreas	Pancrea
27	chr3:101386200-101393600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:101386200-101394400	Weak transcription	Ovary	ovary
29	chr3:101386400-101394200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:101386600-101394400	Weak transcription	Psoas Muscle	Psoas
31	chr3:101387400-101393800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:101387400-101394000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:101387600-101393800	Weak transcription	Brain Hippocampus Middle	brain
34	chr3:101388200-101394600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:101388600-101394400	Weak transcription	Colonic Mucosa	Colon
36	chr3:101388800-101394600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:101389000-101394400	Weak transcription	Fetal Stomach	stomach
38	chr3:101389800-101394400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr3:101389800-101394400	Weak transcription	Fetal Intestine Small	intestine
40	chr3:101390000-101393800	Weak transcription	HUVEC	blood vessel
41	chr3:101390200-101393000	Weak transcription	Fetal Brain Male	brain
42	chr3:101390200-101393400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr3:101390200-101393600	Weak transcription	Fetal Intestine Large	intestine
44	chr3:101390200-101393800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:101390200-101393800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr3:101390200-101394000	Weak transcription	NH-A	brain
47	chr3:101390200-101394200	Weak transcription	Fetal Kidney	kidney
48	chr3:101390200-101394600	Weak transcription	Aorta	Aorta
49	chr3:101390400-101392200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:101390400-101392400	Weak transcription	Primary T cells fromperipheralblood	blood

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