Variant report

Variant	rs6762367
Chromosome Location	chr3:101276655-101276656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:101276306-101276662	HepG2	liver:	n/a	chr3:101276478-101276489
2	ATF1	chr3:101276319-101276662	K562	blood:	n/a	n/a
3	KAP1	chr3:101276249-101276923	HEK293	kidney:	n/a	n/a
4	JUND	chr3:101276246-101276697	K562	blood:	n/a	n/a
5	IRF1	chr3:101276523-101276797	K562	blood:	n/a	chr3:101276670-101276680 chr3:101276669-101276682 chr3:101276668-101276688 chr3:101276670-101276684 chr3:101276669-101276682 chr3:101276669-101276683 chr3:101276668-101276679 chr3:101276666-101276680
6	CEBPB	chr3:101276253-101276678	K562	blood:	n/a	chr3:101276478-101276489
7	CEBPD	chr3:101276261-101276666	K562	blood:	n/a	n/a
8	EP300	chr3:101276243-101276756	K562	blood:	n/a	n/a
9	TCF7L2	chr3:101276229-101276865	HEK293	kidney:	n/a	n/a
10	CEBPD	chr3:101276247-101276702	K562	blood:	n/a	n/a
11	RCOR1	chr3:101276119-101276760	K562	blood:	n/a	n/a
12	TBL1XR1	chr3:101276425-101276709	K562	blood:	n/a	n/a
13	IRF1	chr3:101276441-101276956	K562	blood:	n/a	chr3:101276670-101276680 chr3:101276669-101276682 chr3:101276668-101276688 chr3:101276670-101276684 chr3:101276669-101276682 chr3:101276669-101276683 chr3:101276668-101276679 chr3:101276666-101276680
14	CEBPB	chr3:101276256-101276680	K562	blood:	n/a	chr3:101276478-101276489

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:101276617-101276667	HIPEpiC	eye:	n/a
2	chr3:101276617-101276667	HPAEpiC	pulmonary alveolar:	n/a
3	chr3:101276617-101276667	HRPEpiC	eye:	n/a
4	chr3:101276617-101276667	NB4	blood:	n/a
5	chr3:101276617-101276667	SK-N-SH_RA	brain:	n/a
6	chr3:101276617-101276667	MCF-7	breast:	n/a
7	chr3:101276617-101276667	RPTEC	kidney:	n/a
8	chr3:101276617-101276667	GM12892	blood:	n/a
9	chr3:101276617-101276667	BJ	skin:	n/a
10	chr3:101276617-101276667	HCT-116	colon:	n/a
11	chr3:101276617-101276667	PFSK-1	brain:	n/a
12	chr3:101276617-101276667	AG09319	gingival:	n/a
13	chr3:101276617-101276667	HNPCEpiC	eye:	n/a
14	chr3:101276617-101276667	Jurkat	blood:	n/a
15	chr3:101276617-101276667	SKMC	muscle:	n/a
16	chr3:101276617-101276667	AG04449	skin:	fetal
17	chr3:101276617-101276667	HEEpiC	esophagus:	n/a
18	chr3:101276617-101276667	ProgFib	skin:	n/a
19	chr3:101276617-101276667	A549	lung:	n/a
20	chr3:101276617-101276667	SK-N-MC	brain:	n/a
21	chr3:101276617-101276667	GM19239	blood:	n/a
22	chr3:101276617-101276667	GM06990	blood:	n/a
23	chr3:101276617-101276667	ECC-1	luminal epithelium:	n/a
24	chr3:101276617-101276667	H1-hESC	embryonic stem cell:	embryo
25	chr3:101276617-101276667	BE2_C	brain:	n/a
26	chr3:101276617-101276667	HCF	heart:	n/a
27	chr3:101276617-101276667	LNCaP	prostate:	n/a
28	chr3:101276617-101276667	AG09309	skin:	n/a
29	chr3:101276617-101276667	U87	brain:	n/a
30	chr3:101276617-101276667	AG10803	skin:	n/a
31	chr3:101276617-101276667	HUVEC	blood vessel:	n/a
32	chr3:101276617-101276667	AG04450	lung:	fetal
33	chr3:101276617-101276667	PrEC	prostate:	n/a
34	chr3:101276617-101276667	Hela-S3	cervix:	n/a
35	chr3:101276617-101276667	CMK	blood:	n/a
36	chr3:101276617-101276667	SK-N-SH	brain:	n/a
37	chr3:101276617-101276667	T-47D	breast:	n/a
38	chr3:101276617-101276667	HRE	kidney:	n/a
39	chr3:101276617-101276667	HAEpiC	amniotic membrane:	n/a
40	chr3:101276617-101276667	K562	blood:	n/a
41	chr3:101276617-101276667	ovcar-3	ovarian:	n/a
42	chr3:101276617-101276667	HCPEpiC	choroid plexus:	n/a
43	chr3:101276617-101276667	GM12891	blood:	n/a
44	chr3:101276617-101276667	HCM	heart:	n/a
45	chr3:101276617-101276667	PANC-1	pancreas:	n/a
46	chr3:101276617-101276667	NT2-D1	testis:	n/a
47	chr3:101276617-101276667	HepG2	liver:	n/a
48	chr3:101276617-101276667	HMEC	breast:	n/a
49	chr3:101276617-101276667	NHDF-neo	bronchial:	n/a
50	chr3:101276617-101276667	HEK293	kidney:	embryo

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101273701..101278285-chr3:101278645..101282162,6	K562	blood:

No data

Variant related genes	Relation type
TRMT10C	TF binding region
TRMT10C	CpG island
ENSG00000174173	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1078154	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12629395	0.87[EUR][1000 genomes]
rs12631729	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12636505	0.81[ASN][1000 genomes]
rs13062695	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13063994	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13065665	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13070567	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13078121	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097625	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097712	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843817	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs16844078	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1976944	0.97[ASN][1000 genomes]
rs34408425	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34774691	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34930373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35917542	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3762735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4260407	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4553955	0.88[CEU][hapmap]
rs55633838	0.81[ASN][1000 genomes]
rs62280747	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6441619	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs6792847	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs71315243	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71315244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71315245	0.87[EUR][1000 genomes]
rs71315246	0.88[EUR][1000 genomes]
rs72487765	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7619122	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7630598	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7632449	1.00[YRI][hapmap]
rs7637805	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101273000-101277600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:101274600-101280400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:101276000-101280000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:101276400-101276800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
5	chr3:101276600-101276800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:101276600-101276800	Flanking Active TSS	K562	blood
7	chr3:101276600-101277000	Enhancers	HepG2	liver
8	chr3:101276600-101280400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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