Variant report

Variant	rs35917542
Chromosome Location	chr3:101295502-101295503
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101294680..101296540-chr3:101306521..101308762,3	MCF-7	breast:
2	chr3:101291104..101295547-chr3:101393750..101397705,12	MCF-7	breast:
3	chr3:101293308..101296113-chr3:101394030..101397396,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081154	Chromatin interaction
ENSG00000256628	Chromatin interaction
ENSG00000066422	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1078154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11556582	0.80[AMR][1000 genomes]
rs12629395	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12631729	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062695	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13063994	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13065665	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078121	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097625	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097712	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976944	1.00[ASN][1000 genomes]
rs34408425	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34774691	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34930373	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762735	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56899303	0.82[AMR][1000 genomes]
rs6441619	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6762367	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792847	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71315243	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71315244	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315245	0.88[EUR][1000 genomes]
rs71315246	0.89[EUR][1000 genomes]
rs7619122	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630598	0.89[EUR][1000 genomes]
rs7637805	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965193	chr3:101294846-101297410	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101293800-101295600	Weak transcription	Spleen	Spleen
2	chr3:101294000-101295600	Weak transcription	Gastric	stomach
3	chr3:101294000-101295600	Weak transcription	Left Ventricle	heart
4	chr3:101294000-101295600	Weak transcription	Lung	lung
5	chr3:101294000-101295600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:101294000-101298400	Weak transcription	Pancreas	Pancrea
7	chr3:101294000-101298400	Weak transcription	Small Intestine	intestine
8	chr3:101294000-101301800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:101294000-101305200	Weak transcription	Esophagus	oesophagus
10	chr3:101294000-101312200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:101294200-101295600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr3:101294200-101295600	Weak transcription	Aorta	Aorta
13	chr3:101294200-101295600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:101294200-101296000	Weak transcription	Placenta	Placenta
15	chr3:101294200-101309000	Weak transcription	Colonic Mucosa	Colon
16	chr3:101294200-101310000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:101294400-101295600	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:101294400-101295600	Weak transcription	Fetal Thymus	thymus
20	chr3:101294400-101295600	Weak transcription	Thymus	Thymus
21	chr3:101294400-101298400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:101294400-101309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:101294600-101295600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr3:101294600-101297200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:101294600-101297600	Weak transcription	Fetal Lung	lung
26	chr3:101294600-101298600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:101294600-101298600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr3:101294800-101295600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr3:101294800-101295600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:101294800-101295600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:101294800-101295600	Weak transcription	Brain Germinal Matrix	brain
32	chr3:101294800-101295600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:101294800-101295600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:101294800-101295600	Weak transcription	Fetal Brain Female	brain
35	chr3:101294800-101295800	Weak transcription	Fetal Brain Male	brain
36	chr3:101294800-101296200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr3:101294800-101296200	Weak transcription	Stomach Mucosa	stomach
38	chr3:101294800-101297000	Weak transcription	Colon Smooth Muscle	Colon
39	chr3:101294800-101297400	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr3:101294800-101297600	Weak transcription	HSMM	muscle
41	chr3:101294800-101298400	Weak transcription	Brain Substantia Nigra	brain
42	chr3:101294800-101298400	Weak transcription	Right Ventricle	heart
43	chr3:101294800-101298600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr3:101294800-101301200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr3:101294800-101305200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:101295000-101295600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:101295000-101295600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr3:101295000-101295600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr3:101295000-101295600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:101295000-101295600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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