Variant report

Variant	rs56899303
Chromosome Location	chr3:101291983-101291984
allele	-/CACACACA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:101291764-101294002	HepG2	liver:	n/a	n/a
2	CTCF	chr3:101291656-101293279	A549	lung:	n/a	chr3:101292581-101292597
3	POLR2A	chr3:101291963-101294204	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr3:101291924-101293722	K562	blood:	n/a	n/a
5	MXI1	chr3:101291618-101294453	SK-N-SH	brain:	n/a	chr3:101294181-101294196 chr3:101293538-101293553
6	MAFK	chr3:101291966-101293411	Hela-S3	cervix:	n/a	chr3:101292834-101292854
7	POLR2A	chr3:101291664-101294093	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:101235055..101237948-chr3:101291499..101293284,2	MCF-7	breast:
2	chr3:101230224..101236227-chr3:101287209..101294479,8	K562	blood:
3	chr3:101230669..101232356-chr3:101291492..101293831,2	K562	blood:
4	chr3:101289369..101294999-chr3:101391357..101396813,8	K562	blood:
5	chr1:207495365..207495907-chr3:101291876..101292614,2	Hela-S3	cervix:
6	chr3:101291696..101294315-chr3:101429379..101432021,3	K562	blood:
7	chr3:101291104..101295547-chr3:101393750..101397705,12	MCF-7	breast:
8	chr3:101289588..101293101-chr3:101394155..101396875,5	MCF-7	breast:
9	chr3:101230038..101233245-chr3:101289410..101293829,6	MCF-7	breast:
10	chr3:101231111..101234614-chr3:101289997..101293015,3	MCF-7	breast:
11	chr3:101291780..101294720-chr3:101394004..101396565,4	K562	blood:
12	chr3:101212560..101214999-chr3:101290197..101292554,2	K562	blood:
13	chr3:101291801..101292869-chr3:101354955..101356014,3	MCF-7	breast:
14	chr3:101290641..101295184-chr3:101404268..101406806,5	MCF-7	breast:
15	chr3:101291201..101295304-chr3:101402286..101407928,8	MCF-7	breast:
16	chr3:101288583..101290158-chr3:101290409..101292112,2	K562	blood:
17	chr3:101240327..101242182-chr3:101291977..101294150,2	MCF-7	breast:

No data

Variant related genes	Relation type
PCNP	TF binding region
ENSG00000066422	Chromatin interaction
ENSG00000175841	Chromatin interaction
ENSG00000256628	Chromatin interaction
ENSG00000138468	Chromatin interaction
ENSG00000244119	Chromatin interaction
ENSG00000114391	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1078154	0.82[AMR][1000 genomes]
rs13070567	0.82[AMR][1000 genomes]
rs13097625	0.82[AMR][1000 genomes]
rs16844078	0.82[AMR][1000 genomes]
rs35917542	0.82[AMR][1000 genomes]
rs7637805	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1537592	chr3:101291983-101291984	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101281400-101292600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:101281800-101292000	Weak transcription	Colonic Mucosa	Colon
3	chr3:101281800-101292200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:101281800-101292200	Weak transcription	Esophagus	oesophagus
5	chr3:101281800-101292200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:101282000-101292200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:101282000-101292200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:101282000-101292200	Weak transcription	Right Atrium	heart
9	chr3:101282200-101292200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:101282200-101292600	Weak transcription	Aorta	Aorta
11	chr3:101282400-101292000	Weak transcription	Right Ventricle	heart
12	chr3:101282400-101292200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:101282400-101292400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:101282400-101292600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:101282400-101292600	Weak transcription	Spleen	Spleen
16	chr3:101282600-101292000	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:101282600-101292200	Weak transcription	Small Intestine	intestine
18	chr3:101283000-101292600	Weak transcription	Gastric	stomach
19	chr3:101285000-101292400	Weak transcription	Ovary	ovary
20	chr3:101285200-101292000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:101285200-101292000	Weak transcription	Fetal Brain Male	brain
22	chr3:101285400-101292000	Weak transcription	Brain Angular Gyrus	brain
23	chr3:101285400-101292000	Weak transcription	Brain Anterior Caudate	brain
24	chr3:101285400-101292000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:101285600-101292000	Weak transcription	Liver	Liver
26	chr3:101285600-101292000	Weak transcription	Osteobl	bone
27	chr3:101285600-101292200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr3:101285600-101292200	Weak transcription	Placenta	Placenta
29	chr3:101285600-101292200	Weak transcription	Left Ventricle	heart
30	chr3:101285600-101292600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:101285800-101292000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:101285800-101292000	Weak transcription	Colon Smooth Muscle	Colon
33	chr3:101285800-101292000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr3:101286000-101292200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:101286200-101292000	Weak transcription	Fetal Intestine Small	intestine
36	chr3:101286200-101292000	Weak transcription	NHDF-Ad	bronchial
37	chr3:101286400-101292000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr3:101286400-101292000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:101286400-101292000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:101286400-101292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr3:101286400-101292000	Weak transcription	Brain Germinal Matrix	brain
42	chr3:101286400-101292000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr3:101286400-101292000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr3:101286400-101292200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr3:101286400-101292600	Weak transcription	Lung	lung
46	chr3:101286600-101292000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr3:101286600-101292000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:101286600-101292000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:101286600-101292000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:101286600-101292000	Weak transcription	Adipose Nuclei	Adipose

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