Variant report

Variant	rs11919906
Chromosome Location	chr3:101238983-101238984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr3:101238476-101239023	HepG2	liver:	n/a	chr3:101238735-101238746
2	ARID3A	chr3:101238591-101239048	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101230849..101233944-chr3:101235789..101239028,3	MCF-7	breast:

Variant related genes	Relation type
FAM172BP	TF binding region
ENSG00000138468	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11918335	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12636505	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13347262	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1405781	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17487	0.83[EUR][1000 genomes]
rs1880982	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1986294	0.86[EUR][1000 genomes]
rs2449822	0.85[EUR][1000 genomes]
rs4260407	1.00[ASN][1000 genomes]
rs475521	0.86[EUR][1000 genomes]
rs476090	0.83[EUR][1000 genomes]
rs476491	0.86[EUR][1000 genomes]
rs478173	0.85[EUR][1000 genomes]
rs479522	0.83[EUR][1000 genomes]
rs479723	0.82[EUR][1000 genomes]
rs481809	0.83[EUR][1000 genomes]
rs482055	0.86[EUR][1000 genomes]
rs482436	0.83[EUR][1000 genomes]
rs483947	0.86[EUR][1000 genomes]
rs485130	0.83[EUR][1000 genomes]
rs489455	0.86[EUR][1000 genomes]
rs500480	0.86[EUR][1000 genomes]
rs501702	0.86[EUR][1000 genomes]
rs505037	0.86[EUR][1000 genomes]
rs513188	0.86[EUR][1000 genomes]
rs513994	0.83[EUR][1000 genomes]
rs515307	0.83[EUR][1000 genomes]
rs516312	0.83[EUR][1000 genomes]
rs517698	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs520879	0.86[EUR][1000 genomes]
rs527836	0.82[EUR][1000 genomes]
rs530566	0.86[EUR][1000 genomes]
rs535881	0.83[EUR][1000 genomes]
rs536561	0.86[EUR][1000 genomes]
rs538834	0.83[EUR][1000 genomes]
rs545322	0.86[EUR][1000 genomes]
rs546090	0.86[EUR][1000 genomes]
rs550241	0.85[EUR][1000 genomes]
rs554215	0.86[EUR][1000 genomes]
rs55633838	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs559042	0.86[EUR][1000 genomes]
rs559400	0.82[EUR][1000 genomes]
rs563909	0.86[EUR][1000 genomes]
rs567983	0.82[EUR][1000 genomes]
rs569339	0.86[EUR][1000 genomes]
rs570318	0.86[EUR][1000 genomes]
rs571883	0.86[EUR][1000 genomes]
rs573908	0.86[EUR][1000 genomes]
rs575317	0.86[EUR][1000 genomes]
rs62280731	0.84[ASN][1000 genomes]
rs62280733	0.92[ASN][1000 genomes]
rs62280735	0.92[ASN][1000 genomes]
rs62280737	0.95[ASN][1000 genomes]
rs62280745	1.00[ASN][1000 genomes]
rs62280746	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280747	1.00[ASN][1000 genomes]
rs6777720	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7622461	0.92[ASN][1000 genomes]
rs9790303	0.97[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101232800-101240200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:101236200-101239600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:101236200-101241200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr3:101237000-101240000	Enhancers	HUVEC	blood vessel
5	chr3:101237000-101241200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:101237600-101239400	Enhancers	Primary T cells from cord blood	blood
7	chr3:101237800-101239200	Enhancers	Hela-S3	cervix
8	chr3:101237800-101240000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:101237800-101240000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:101237800-101240000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:101237800-101240000	Enhancers	HepG2	liver
12	chr3:101237800-101240000	Weak transcription	HMEC	breast
13	chr3:101238000-101239000	Weak transcription	Fetal Thymus	thymus
14	chr3:101238000-101239200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:101238000-101239600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr3:101238000-101239600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:101238000-101239800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr3:101238000-101240000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:101238000-101240000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:101238000-101240000	Weak transcription	Thymus	Thymus
21	chr3:101238000-101242200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr3:101238000-101242200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr3:101238200-101239200	Enhancers	Fetal Intestine Small	intestine
24	chr3:101238200-101239600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:101238200-101240000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr3:101238400-101239000	Weak transcription	K562	blood
27	chr3:101238400-101239400	Weak transcription	GM12878-XiMat	blood
28	chr3:101238400-101239600	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr3:101238600-101239400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:101238600-101240800	Enhancers	NHEK	skin
31	chr3:101238800-101239200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr3:101238800-101239200	Enhancers	Fetal Intestine Large	intestine
33	chr3:101238800-101239200	Enhancers	Pancreas	Pancrea
34	chr3:101238800-101239800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:101238800-101241800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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