Variant report

Variant	rs62287717
Chromosome Location	chr3:156229977-156229978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156227893..156231074-chr3:156238845..156242375,3	K562	blood:
2	chr3:156227911..156230304-chr3:156391869..156395073,3	K562	blood:

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction
ENSG00000272990	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17350157	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156211000-156234000	Weak transcription	Aorta	Aorta
2	chr3:156216400-156231400	Weak transcription	HSMM	muscle
3	chr3:156225000-156234400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:156225400-156230200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:156225600-156231200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:156227600-156231400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:156227600-156232200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:156227600-156233200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:156227600-156233400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:156227600-156234000	Weak transcription	Brain Anterior Caudate	brain
11	chr3:156227600-156246000	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:156228000-156232400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:156228400-156231200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:156229000-156230000	Weak transcription	Left Ventricle	heart
15	chr3:156229600-156230400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:156229600-156230400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr3:156229600-156230400	Enhancers	Colon Smooth Muscle	Colon
18	chr3:156229600-156230600	Enhancers	Fetal Heart	heart
19	chr3:156229600-156236600	Weak transcription	Pancreas	Pancrea
20	chr3:156229800-156230400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links