Variant report

Variant	rs17350157
Chromosome Location	chr3:156155736-156155737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13069492	1.00[ASN][1000 genomes]
rs13069920	1.00[ASN][1000 genomes]
rs13070956	1.00[ASN][1000 genomes]
rs13076854	1.00[ASN][1000 genomes]
rs13086617	1.00[ASN][1000 genomes]
rs34582489	1.00[ASN][1000 genomes]
rs62287717	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67482406	1.00[ASN][1000 genomes]
rs71623492	1.00[ASN][1000 genomes]
rs7641186	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156147400-156157200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:156150800-156160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:156153000-156156200	Weak transcription	Fetal Heart	heart
5	chr3:156153600-156155800	Weak transcription	NHEK	skin
6	chr3:156153600-156157800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links