The 2.0 version of rSNPBase

Variant report

Variant rs71623492
Chromosome Location chr6:56429658-56429659
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:56408200-56440400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr6:56408200-56440600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr6:56408200-56496000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr6:56408400-56430800 Weak transcription Primary hematopoietic stem cells blood
5 chr6:56413800-56458400 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr6:56415800-56435200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr6:56417000-56516400 Weak transcription Pancreas Pancrea
8 chr6:56417200-56462000 Weak transcription Lung lung
9 chr6:56417200-56481400 Weak transcription Esophagus oesophagus
10 chr6:56417400-56430000 Weak transcription Fetal Intestine Small intestine
11 chr6:56417400-56435400 Weak transcription HepG2 liver
12 chr6:56417800-56430400 Weak transcription Fetal Muscle Trunk muscle
13 chr6:56417800-56454200 Weak transcription Psoas Muscle Psoas
14 chr6:56417800-56455400 Weak transcription Gastric stomach
15 chr6:56418000-56430200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr6:56418000-56435400 Weak transcription Fetal Brain Male brain
17 chr6:56418200-56430800 Weak transcription NHLF lung
18 chr6:56420400-56430200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr6:56420400-56430800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr6:56420400-56434800 Weak transcription Brain Germinal Matrix brain
21 chr6:56420400-56457400 Weak transcription Monocytes-CD14+_RO01746 blood
22 chr6:56420600-56429800 Weak transcription Right Ventricle heart
23 chr6:56420600-56430000 Weak transcription Fetal Stomach stomach
24 chr6:56420600-56430400 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr6:56420600-56433400 Weak transcription NHEK skin
26 chr6:56420600-56435200 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr6:56420600-56435200 Weak transcription H9 Cell Line embryonic stem cell
28 chr6:56420600-56437600 Weak transcription Primary monocytes fromperipheralblood blood
29 chr6:56420600-56440400 Weak transcription Duodenum Mucosa Duodenum
30 chr6:56420600-56454000 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr6:56420600-56455400 Weak transcription Aorta Aorta
32 chr6:56420800-56430400 Weak transcription Stomach Smooth Muscle stomach
33 chr6:56420800-56430600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr6:56420800-56438000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr6:56421000-56430800 Weak transcription A549 lung
36 chr6:56421000-56431800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr6:56421000-56432400 Weak transcription iPS-18 Cell Line embryonic stem cell
38 chr6:56421000-56434600 Weak transcription Fetal Heart heart
39 chr6:56422000-56434800 Weak transcription Colon Smooth Muscle Colon
40 chr6:56423800-56456200 Weak transcription Brain Substantia Nigra brain
41 chr6:56424000-56430800 Weak transcription Brain Inferior Temporal Lobe brain
42 chr6:56424200-56430200 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr6:56424200-56430600 Weak transcription Brain Hippocampus Middle brain
44 chr6:56426400-56430400 Weak transcription Ovary ovary
45 chr6:56426400-56430400 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr6:56426400-56430600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr6:56426400-56430800 Weak transcription iPS-20b Cell Line embryonic stem cell
48 chr6:56426400-56431600 Weak transcription GM12878-XiMat blood
49 chr6:56426400-56432400 Weak transcription Brain Anterior Caudate brain
50 chr6:56426400-56432400 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015