Variant report

Variant	rs2013676
Chromosome Location	chr3:155811323-155811324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155811121..155812697-chr4:74123629..74125315,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132466	Chromatin interaction
ENSG00000250220	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs13058807	1.00[ASN][1000 genomes]
rs13059614	1.00[ASN][1000 genomes]
rs13062883	1.00[ASN][1000 genomes]
rs13065118	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13069492	1.00[ASN][1000 genomes]
rs13069920	1.00[ASN][1000 genomes]
rs13070956	1.00[ASN][1000 genomes]
rs13074749	1.00[ASN][1000 genomes]
rs13076854	1.00[ASN][1000 genomes]
rs13077891	1.00[ASN][1000 genomes]
rs13077893	1.00[ASN][1000 genomes]
rs13085540	1.00[ASN][1000 genomes]
rs13086158	1.00[ASN][1000 genomes]
rs13086539	1.00[ASN][1000 genomes]
rs13086617	1.00[ASN][1000 genomes]
rs13086888	1.00[ASN][1000 genomes]
rs13092781	1.00[ASN][1000 genomes]
rs13094737	1.00[ASN][1000 genomes]
rs13098116	1.00[ASN][1000 genomes]
rs13099875	1.00[ASN][1000 genomes]
rs1499053	1.00[ASN][1000 genomes]
rs16825721	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454940	1.00[ASN][1000 genomes]
rs28653682	1.00[ASN][1000 genomes]
rs28670754	1.00[ASN][1000 genomes]
rs34176040	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34431563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34447473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34582489	1.00[ASN][1000 genomes]
rs34611996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34636155	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34721485	1.00[ASN][1000 genomes]
rs34769075	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34859273	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34965136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35081098	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35120330	1.00[ASN][1000 genomes]
rs35306833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35336094	1.00[ASN][1000 genomes]
rs35385116	1.00[ASN][1000 genomes]
rs35388604	1.00[ASN][1000 genomes]
rs35692708	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35938711	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35972274	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36101183	1.00[ASN][1000 genomes]
rs36106222	1.00[ASN][1000 genomes]
rs36124391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4378930	1.00[ASN][1000 genomes]
rs55868315	1.00[ASN][1000 genomes]
rs57525215	1.00[ASN][1000 genomes]
rs58227176	1.00[ASN][1000 genomes]
rs58487502	1.00[ASN][1000 genomes]
rs59289038	1.00[ASN][1000 genomes]
rs6441048	1.00[ASN][1000 genomes]
rs66496214	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66718940	1.00[ASN][1000 genomes]
rs66853377	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67049008	1.00[ASN][1000 genomes]
rs67139403	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67148190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67341546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67420553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67482406	1.00[ASN][1000 genomes]
rs6767282	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6770125	1.00[ASN][1000 genomes]
rs6775190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67780510	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781558	1.00[ASN][1000 genomes]
rs67884325	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67899274	1.00[ASN][1000 genomes]
rs67955446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805895	1.00[ASN][1000 genomes]
rs68176279	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68188495	1.00[ASN][1000 genomes]
rs71310462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310465	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71623492	1.00[ASN][1000 genomes]
rs73159063	1.00[ASN][1000 genomes]
rs73159074	1.00[ASN][1000 genomes]
rs73159092	1.00[ASN][1000 genomes]
rs73161026	1.00[ASN][1000 genomes]
rs73162706	1.00[ASN][1000 genomes]
rs73873481	1.00[ASN][1000 genomes]
rs7615287	1.00[ASN][1000 genomes]
rs7615469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617514	1.00[ASN][1000 genomes]
rs7617878	1.00[ASN][1000 genomes]
rs7627181	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627649	1.00[ASN][1000 genomes]
rs7627831	1.00[ASN][1000 genomes]
rs7639203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641186	1.00[ASN][1000 genomes]
rs7644218	1.00[ASN][1000 genomes]
rs7649451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813738	1.00[ASN][1000 genomes]
rs9837458	1.00[ASN][1000 genomes]
rs9848466	0.84[CEU][hapmap]
rs9850516	1.00[ASN][1000 genomes]
rs9874263	1.00[ASN][1000 genomes]
rs9882341	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2013676	SLC33A1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155800200-155811800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:155808800-155811800	Weak transcription	Fetal Brain Male	brain
3	chr3:155811000-155811800	Weak transcription	Liver	Liver

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