Variant report
Variant | rs13059614 |
---|---|
Chromosome Location | chr3:155879984-155879985 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13058807 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13062883 | 1.00[ASN][1000 genomes] |
rs13065118 | 1.00[ASN][1000 genomes] |
rs13069492 | 1.00[ASN][1000 genomes] |
rs13069920 | 1.00[ASN][1000 genomes] |
rs13070956 | 1.00[ASN][1000 genomes] |
rs13074749 | 1.00[ASN][1000 genomes] |
rs13076854 | 1.00[ASN][1000 genomes] |
rs13077891 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13077893 | 1.00[ASN][1000 genomes] |
rs13085540 | 1.00[ASN][1000 genomes] |
rs13086158 | 1.00[ASN][1000 genomes] |
rs13086539 | 1.00[ASN][1000 genomes] |
rs13086617 | 1.00[ASN][1000 genomes] |
rs13086888 | 1.00[ASN][1000 genomes] |
rs13092781 | 1.00[ASN][1000 genomes] |
rs13094737 | 1.00[ASN][1000 genomes] |
rs13098116 | 1.00[ASN][1000 genomes] |
rs13099875 | 1.00[ASN][1000 genomes] |
rs1499053 | 1.00[ASN][1000 genomes] |
rs16825721 | 1.00[ASN][1000 genomes] |
rs16825722 | 1.00[ASN][1000 genomes] |
rs2013676 | 1.00[ASN][1000 genomes] |
rs28454940 | 1.00[ASN][1000 genomes] |
rs28653682 | 1.00[ASN][1000 genomes] |
rs28670754 | 1.00[ASN][1000 genomes] |
rs34176040 | 1.00[ASN][1000 genomes] |
rs34431563 | 1.00[ASN][1000 genomes] |
rs34447473 | 1.00[ASN][1000 genomes] |
rs34582489 | 1.00[ASN][1000 genomes] |
rs34611996 | 1.00[ASN][1000 genomes] |
rs34636155 | 1.00[ASN][1000 genomes] |
rs34721485 | 1.00[ASN][1000 genomes] |
rs34769075 | 1.00[ASN][1000 genomes] |
rs34786673 | 1.00[ASN][1000 genomes] |
rs34859273 | 1.00[ASN][1000 genomes] |
rs34965136 | 1.00[ASN][1000 genomes] |
rs34971897 | 1.00[ASN][1000 genomes] |
rs35081098 | 1.00[ASN][1000 genomes] |
rs35120330 | 1.00[ASN][1000 genomes] |
rs35306833 | 1.00[ASN][1000 genomes] |
rs35336094 | 1.00[ASN][1000 genomes] |
rs35385116 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35388604 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35692708 | 1.00[ASN][1000 genomes] |
rs35938711 | 1.00[ASN][1000 genomes] |
rs35972274 | 1.00[ASN][1000 genomes] |
rs36101183 | 1.00[ASN][1000 genomes] |
rs36106222 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs36124391 | 1.00[ASN][1000 genomes] |
rs4378930 | 1.00[ASN][1000 genomes] |
rs55868315 | 1.00[ASN][1000 genomes] |
rs57525215 | 1.00[ASN][1000 genomes] |
rs58487502 | 1.00[ASN][1000 genomes] |
rs59289038 | 1.00[ASN][1000 genomes] |
rs6441048 | 1.00[ASN][1000 genomes] |
rs66496214 | 1.00[ASN][1000 genomes] |
rs66718940 | 1.00[ASN][1000 genomes] |
rs67049008 | 1.00[ASN][1000 genomes] |
rs67139403 | 1.00[ASN][1000 genomes] |
rs67148190 | 1.00[ASN][1000 genomes] |
rs67341546 | 1.00[ASN][1000 genomes] |
rs67420553 | 1.00[ASN][1000 genomes] |
rs67482406 | 1.00[ASN][1000 genomes] |
rs6767282 | 1.00[ASN][1000 genomes] |
rs6770125 | 1.00[ASN][1000 genomes] |
rs6775190 | 1.00[ASN][1000 genomes] |
rs67780510 | 1.00[ASN][1000 genomes] |
rs6781558 | 1.00[ASN][1000 genomes] |
rs67899274 | 1.00[ASN][1000 genomes] |
rs67955446 | 1.00[ASN][1000 genomes] |
rs6805895 | 1.00[ASN][1000 genomes] |
rs68176279 | 1.00[ASN][1000 genomes] |
rs68188495 | 1.00[ASN][1000 genomes] |
rs71310462 | 1.00[ASN][1000 genomes] |
rs71310463 | 1.00[ASN][1000 genomes] |
rs71310465 | 1.00[ASN][1000 genomes] |
rs71623492 | 1.00[ASN][1000 genomes] |
rs73159092 | 1.00[ASN][1000 genomes] |
rs73161026 | 1.00[ASN][1000 genomes] |
rs73162706 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73873481 | 1.00[ASN][1000 genomes] |
rs7615469 | 1.00[ASN][1000 genomes] |
rs7617514 | 1.00[ASN][1000 genomes] |
rs7627181 | 1.00[ASN][1000 genomes] |
rs7627649 | 1.00[ASN][1000 genomes] |
rs7627831 | 1.00[ASN][1000 genomes] |
rs7639203 | 1.00[ASN][1000 genomes] |
rs7641186 | 1.00[ASN][1000 genomes] |
rs7644218 | 1.00[ASN][1000 genomes] |
rs7649451 | 1.00[ASN][1000 genomes] |
rs9683003 | 1.00[ASN][1000 genomes] |
rs9813738 | 1.00[ASN][1000 genomes] |
rs9837458 | 1.00[ASN][1000 genomes] |
rs9850516 | 1.00[ASN][1000 genomes] |
rs9874263 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv592085 | chr3:155827634-156012679 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:155870400-155917800 | Weak transcription | Aorta | Aorta |
2 | chr3:155877600-155880000 | Enhancers | Primary T helper 17 cells PMA-I stimulated | -- |
3 | chr3:155878200-155880000 | Enhancers | Primary T helper cells PMA-I stimulated | -- |
4 | chr3:155878200-155880000 | Enhancers | Primary T helper cells fromperipheralblood | blood |
5 | chr3:155878600-155880400 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
6 | chr3:155878800-155880400 | Enhancers | Primary T helper memory cells from peripheral blood 1 | blood |
7 | chr3:155878800-155883600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
8 | chr3:155879000-155880000 | Enhancers | GM12878-XiMat | blood |
9 | chr3:155879200-155881200 | Weak transcription | Colon Smooth Muscle | Colon |
10 | chr3:155879200-155881600 | Weak transcription | Small Intestine | intestine |
11 | chr3:155879600-155880000 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |