Variant report

Variant	rs34721485
Chromosome Location	chr3:155898429-155898430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr3:155897697-155898455	SK-N-SH	brain:	n/a	n/a
2	TEAD4	chr3:155897833-155898448	SK-N-SH	brain:	n/a	n/a
3	JUND	chr3:155897726-155898444	SK-N-SH	brain:	n/a	n/a
4	FOXM1	chr3:155897830-155898600	SK-N-SH	brain:	n/a	n/a
5	EP300	chr3:155897592-155898517	SK-N-SH	brain:	n/a	n/a
6	STAT3	chr3:155897932-155898434	MCF10A-Er-Src	breast:	n/a	chr3:155898247-155898258
7	PBX3	chr3:155897749-155898434	SK-N-SH	brain:	n/a	n/a
8	GATA3	chr3:155897517-155898711	SK-N-SH	brain:	n/a	chr3:155898234-155898242
9	GATA3	chr3:155897630-155898547	SK-N-SH	brain:	n/a	chr3:155898234-155898242
10	NFIC	chr3:155897648-155898454	SK-N-SH	brain:	n/a	n/a
11	TEAD4	chr3:155897683-155898474	SK-N-SH	brain:	n/a	n/a
12	TCF12	chr3:155897621-155898507	SK-N-SH	brain:	n/a	n/a
13	TCF12	chr3:155897775-155898491	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000227709	TF binding region

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs13058807	1.00[ASN][1000 genomes]
rs13059614	1.00[ASN][1000 genomes]
rs13062883	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065118	1.00[ASN][1000 genomes]
rs13069492	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069920	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070615	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13070956	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074749	1.00[ASN][1000 genomes]
rs13076854	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077031	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13077891	1.00[ASN][1000 genomes]
rs13077893	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079160	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13084227	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13084675	0.82[EUR][1000 genomes]
rs13085088	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13085540	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13086158	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13086539	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086617	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086888	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13092781	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094737	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098116	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099875	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499053	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825721	1.00[ASN][1000 genomes]
rs16825722	1.00[ASN][1000 genomes]
rs2013676	1.00[ASN][1000 genomes]
rs28454940	1.00[ASN][1000 genomes]
rs28653682	1.00[ASN][1000 genomes]
rs28670754	1.00[ASN][1000 genomes]
rs34176040	1.00[ASN][1000 genomes]
rs34431563	1.00[ASN][1000 genomes]
rs34447473	1.00[ASN][1000 genomes]
rs34582489	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34611996	1.00[ASN][1000 genomes]
rs34636155	1.00[ASN][1000 genomes]
rs34769075	1.00[ASN][1000 genomes]
rs34786673	1.00[ASN][1000 genomes]
rs34859273	1.00[ASN][1000 genomes]
rs34965136	1.00[ASN][1000 genomes]
rs34971897	1.00[ASN][1000 genomes]
rs35081098	1.00[ASN][1000 genomes]
rs35120330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35186736	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35306833	1.00[ASN][1000 genomes]
rs35336094	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35385116	1.00[ASN][1000 genomes]
rs35388604	1.00[ASN][1000 genomes]
rs35489883	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35692708	1.00[ASN][1000 genomes]
rs35935941	0.91[EUR][1000 genomes]
rs35938711	1.00[ASN][1000 genomes]
rs35972274	1.00[ASN][1000 genomes]
rs36023787	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36101183	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36106222	1.00[ASN][1000 genomes]
rs36124391	1.00[ASN][1000 genomes]
rs4378930	1.00[ASN][1000 genomes]
rs55868315	1.00[ASN][1000 genomes]
rs57525215	1.00[ASN][1000 genomes]
rs58487502	1.00[ASN][1000 genomes]
rs59260261	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59289038	1.00[ASN][1000 genomes]
rs6441048	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66496214	1.00[ASN][1000 genomes]
rs66718940	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67049008	1.00[ASN][1000 genomes]
rs67139403	1.00[ASN][1000 genomes]
rs67148190	1.00[ASN][1000 genomes]
rs67258913	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67341546	1.00[ASN][1000 genomes]
rs67420553	1.00[ASN][1000 genomes]
rs67482406	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767282	1.00[ASN][1000 genomes]
rs6770125	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775190	1.00[ASN][1000 genomes]
rs67780510	1.00[ASN][1000 genomes]
rs6781558	1.00[ASN][1000 genomes]
rs67899274	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67955446	1.00[ASN][1000 genomes]
rs68058925	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6805895	1.00[ASN][1000 genomes]
rs68176279	1.00[ASN][1000 genomes]
rs68188495	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310462	1.00[ASN][1000 genomes]
rs71310463	1.00[ASN][1000 genomes]
rs71310465	1.00[ASN][1000 genomes]
rs71623492	1.00[ASN][1000 genomes]
rs73159092	1.00[ASN][1000 genomes]
rs73161026	1.00[ASN][1000 genomes]
rs73162706	1.00[ASN][1000 genomes]
rs73873481	1.00[ASN][1000 genomes]
rs7615469	1.00[ASN][1000 genomes]
rs7617514	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627181	1.00[ASN][1000 genomes]
rs7627649	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627831	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639203	1.00[ASN][1000 genomes]
rs7641186	1.00[ASN][1000 genomes]
rs7644218	1.00[ASN][1000 genomes]
rs7649451	1.00[ASN][1000 genomes]
rs9683003	1.00[ASN][1000 genomes]
rs9813738	1.00[ASN][1000 genomes]
rs9837458	1.00[ASN][1000 genomes]
rs9850516	1.00[ASN][1000 genomes]
rs9874263	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155894400-155898600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:155897800-155899200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:155897800-155899400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:155897800-155899800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:155897800-155899800	Enhancers	NHEK	skin
7	chr3:155898000-155899000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:155898000-155899200	Enhancers	HMEC	breast
9	chr3:155898000-155899400	Enhancers	Hela-S3	cervix
10	chr3:155898200-155899400	Enhancers	Osteobl	bone
11	chr3:155898200-155899600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:155898400-155898800	Enhancers	Gastric	stomach
13	chr3:155898400-155899800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:155898400-155899800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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