Variant report

Variant	rs13084675
Chromosome Location	chr3:155942068-155942069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13062883	0.90[EUR][1000 genomes]
rs13065597	1.00[ASN][1000 genomes]
rs13069492	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13069920	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13070615	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070956	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13076854	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13077031	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077893	0.90[EUR][1000 genomes]
rs13079160	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084227	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085088	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086539	0.90[EUR][1000 genomes]
rs13086617	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13092781	0.90[EUR][1000 genomes]
rs13094737	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13098116	0.90[EUR][1000 genomes]
rs13099875	0.90[EUR][1000 genomes]
rs1499053	0.89[EUR][1000 genomes]
rs34582489	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34721485	0.82[EUR][1000 genomes]
rs35120330	0.84[EUR][1000 genomes]
rs35186736	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35336094	0.90[EUR][1000 genomes]
rs35489883	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35935941	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36023787	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36101183	0.90[EUR][1000 genomes]
rs59260261	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441048	0.90[EUR][1000 genomes]
rs66718940	0.90[EUR][1000 genomes]
rs67258913	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67482406	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6770125	0.90[EUR][1000 genomes]
rs67899274	0.90[EUR][1000 genomes]
rs68058925	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68188495	0.90[EUR][1000 genomes]
rs7617514	0.90[EUR][1000 genomes]
rs7627649	0.88[EUR][1000 genomes]
rs7627831	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155936600-155945400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:155936600-155951000	Weak transcription	Aorta	Aorta
3	chr3:155941600-155942200	Active TSS	Spleen	Spleen
4	chr3:155942000-155951200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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